Gene : Seita.7G123400 S. italica v2.2
Defline:  (1 of 2) 1.2.1.13 - Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) / Triosephosphate dehydrogenase (NADP+) Genomic Order:  1234
Name:  ? Seita.7G123400 Secondary Identifier:  ? PAC:32702207
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ANAEROFRUCAT-PWY Setaria italica pathologic  
Sitalica ANAGLYCOLYSIS-PWY Setaria italica pathologic  
Sitalica CALVIN-PWY Setaria italica pathologic  
Sitalica GLUCONEO-PWY Setaria italica pathologic  
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-1042 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica SUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G123400 0.5kb upstream 0.5kb upstream 2401 true scaffold_7: 21893904-21896304 Setaria italica
Seita.7G123400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 21893904-21894403 Setaria italica
Seita.7G123400 0.5kb downstream 0.5kb downstream 2401 true scaffold_7: 21894404-21896804 Setaria italica
Seita.7G123400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 21896305-21896804 Setaria italica
Seita.7G123400 1.0kb upstream 1.0kb upstream 2901 true scaffold_7: 21893404-21896304 Setaria italica
Seita.7G123400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 21893404-21894403 Setaria italica
Seita.7G123400 1.0kb downstream 1.0kb downstream 2901 true scaffold_7: 21894404-21897304 Setaria italica
Seita.7G123400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 21896305-21897304 Setaria italica
Seita.7G123400 2.0kb upstream 2.0kb upstream 3901 true scaffold_7: 21892404-21896304 Setaria italica
Seita.7G123400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 21892404-21894403 Setaria italica
Seita.7G123400 2.0kb downstream 2.0kb downstream 3901 true scaffold_7: 21894404-21898304 Setaria italica
Seita.7G123400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 21896305-21898304 Setaria italica
Seita.7G123400 5.0kb upstream 5.0kb upstream 6901 true scaffold_7: 21889404-21896304 Setaria italica
Seita.7G123400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 21889404-21894403 Setaria italica
Seita.7G123400 5.0kb downstream 5.0kb downstream 6901 true scaffold_7: 21894404-21901304 Setaria italica
Seita.7G123400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 21896305-21901304 Setaria italica
Seita.7G123400 10.0kb upstream 10.0kb upstream 11901 true scaffold_7: 21884404-21896304 Setaria italica
Seita.7G123400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 21884404-21894403 Setaria italica
Seita.7G123400 10.0kb downstream 10.0kb downstream 11901 true scaffold_7: 21894404-21906304 Setaria italica
Seita.7G123400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 21896305-21906304 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186371 5267 Panicoideae View MSA
124578126 5269 Grass View MSA
122045489 5273 Angiosperm View MSA
121346351 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.719     High  
cufflinks 107.891     High  
cufflinks 402.296     High  
cufflinks 673.535     High  
cufflinks 1338.125     High High
cufflinks 84.094     High  
cufflinks 502.305     High  
cufflinks 847.978     High  
cufflinks 667.052     High  
cufflinks 15.102        
cufflinks 14.141     High  
cufflinks 0.07     Low Low
cufflinks 2.325        
cufflinks 263.693     High  
cufflinks 0.221       Low
cufflinks 471.74     High  
cufflinks 0.017     Low Low
cufflinks 16.499     High  
cufflinks 997.04     High  
cufflinks 0.097     Low Low

0 Strain