Gene : Seita.7G129400 S. italica v2.2
Defline:  (1 of 1) PTHR16056:SF2 - TESTIS-EXPRESSED SEQUENCE 10 PROTEIN HOMOLOG Genomic Order:  1294
Name:  ? Seita.7G129400 Secondary Identifier:  ? PAC:32702081
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G129400 0.5kb upstream 0.5kb upstream 8703 true scaffold_7: 22272348-22281050 Setaria italica
Seita.7G129400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 22280551-22281050 Setaria italica
Seita.7G129400 0.5kb downstream 0.5kb downstream 8703 true scaffold_7: 22271848-22280550 Setaria italica
Seita.7G129400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 22271848-22272347 Setaria italica
Seita.7G129400 1.0kb upstream 1.0kb upstream 9203 true scaffold_7: 22272348-22281550 Setaria italica
Seita.7G129400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 22280551-22281550 Setaria italica
Seita.7G129400 1.0kb downstream 1.0kb downstream 9203 true scaffold_7: 22271348-22280550 Setaria italica
Seita.7G129400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 22271348-22272347 Setaria italica
Seita.7G129400 2.0kb upstream 2.0kb upstream 10203 true scaffold_7: 22272348-22282550 Setaria italica
Seita.7G129400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 22280551-22282550 Setaria italica
Seita.7G129400 2.0kb downstream 2.0kb downstream 10203 true scaffold_7: 22270348-22280550 Setaria italica
Seita.7G129400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 22270348-22272347 Setaria italica
Seita.7G129400 5.0kb upstream 5.0kb upstream 13203 true scaffold_7: 22272348-22285550 Setaria italica
Seita.7G129400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 22280551-22285550 Setaria italica
Seita.7G129400 5.0kb downstream 5.0kb downstream 13203 true scaffold_7: 22267348-22280550 Setaria italica
Seita.7G129400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 22267348-22272347 Setaria italica
Seita.7G129400 10.0kb upstream 10.0kb upstream 18203 true scaffold_7: 22272348-22290550 Setaria italica
Seita.7G129400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 22280551-22290550 Setaria italica
Seita.7G129400 10.0kb downstream 10.0kb downstream 18203 true scaffold_7: 22262348-22280550 Setaria italica
Seita.7G129400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 22262348-22272347 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029601 5273 Angiosperm View MSA
122177649 5267 Panicoideae View MSA
124572273 5269 Grass View MSA
121346343 5274 Embryophyte View MSA
123424675 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.091        
cufflinks 0.987        
cufflinks 0.874        
cufflinks 0.557       Low
cufflinks 0.691        
cufflinks 1.032        
cufflinks 0.752        
cufflinks 0.622       Low
cufflinks 1.086        
cufflinks 0.656       Low
cufflinks 1.13        
cufflinks 0.835        
cufflinks 0.741        
cufflinks 1.017        
cufflinks 1.002        
cufflinks 1.204       High
cufflinks 1.057        
cufflinks 1.337       High
cufflinks 0.547       Low
cufflinks 0.876        

0 Strain