Gene : Seita.7G129200 S. italica v2.2
Defline:  (1 of 1) PTHR23076//PTHR23076:SF61 - METALLOPROTEASE M41 FTSH Genomic Order:  1292
Name:  ? Seita.7G129200 Secondary Identifier:  ? PAC:32703080
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G129200 0.5kb upstream 0.5kb upstream 6105 true scaffold_7: 22257513-22263617 Setaria italica
Seita.7G129200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 22263118-22263617 Setaria italica
Seita.7G129200 0.5kb downstream 0.5kb downstream 6105 true scaffold_7: 22257013-22263117 Setaria italica
Seita.7G129200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 22257013-22257512 Setaria italica
Seita.7G129200 1.0kb upstream 1.0kb upstream 6605 true scaffold_7: 22257513-22264117 Setaria italica
Seita.7G129200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 22263118-22264117 Setaria italica
Seita.7G129200 1.0kb downstream 1.0kb downstream 6605 true scaffold_7: 22256513-22263117 Setaria italica
Seita.7G129200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 22256513-22257512 Setaria italica
Seita.7G129200 2.0kb upstream 2.0kb upstream 7605 true scaffold_7: 22257513-22265117 Setaria italica
Seita.7G129200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 22263118-22265117 Setaria italica
Seita.7G129200 2.0kb downstream 2.0kb downstream 7605 true scaffold_7: 22255513-22263117 Setaria italica
Seita.7G129200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 22255513-22257512 Setaria italica
Seita.7G129200 5.0kb upstream 5.0kb upstream 10605 true scaffold_7: 22257513-22268117 Setaria italica
Seita.7G129200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 22263118-22268117 Setaria italica
Seita.7G129200 5.0kb downstream 5.0kb downstream 10605 true scaffold_7: 22252513-22263117 Setaria italica
Seita.7G129200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 22252513-22257512 Setaria italica
Seita.7G129200 10.0kb upstream 10.0kb upstream 15605 true scaffold_7: 22257513-22273117 Setaria italica
Seita.7G129200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 22263118-22273117 Setaria italica
Seita.7G129200 10.0kb downstream 10.0kb downstream 15605 true scaffold_7: 22247513-22263117 Setaria italica
Seita.7G129200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 22247513-22257512 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188263 5267 Panicoideae View MSA
124576432 5269 Grass View MSA
122045675 5273 Angiosperm View MSA
123428918 5275 Viridiplantae View MSA
121344954 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.832        
cufflinks 1.146        
cufflinks 0.788        
cufflinks 0.631        
cufflinks 1.305        
cufflinks 1.252        
cufflinks 1.447        
cufflinks 1.777       High
cufflinks 2.29       High
cufflinks 0.433        
cufflinks 0.557        
cufflinks 0.344       Low
cufflinks 0.268       Low
cufflinks 1.503       High
cufflinks 0.284       Low
cufflinks 1.202        
cufflinks 0.362       Low
cufflinks 0.834        
cufflinks 0.803        
cufflinks 0.344       Low

0 Strain