Gene : Seita.7G133500 S. italica v2.2
Defline:  (1 of 2) PTHR23344//PTHR23344:SF29 - GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE Genomic Order:  1335
Name:  ? Seita.7G133500 Secondary Identifier:  ? PAC:32702242
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7409 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G133500 0.5kb upstream 0.5kb upstream 5888 true scaffold_7: 22593540-22599427 Setaria italica
Seita.7G133500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 22593540-22594039 Setaria italica
Seita.7G133500 0.5kb downstream 0.5kb downstream 5888 true scaffold_7: 22594040-22599927 Setaria italica
Seita.7G133500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 22599428-22599927 Setaria italica
Seita.7G133500 1.0kb upstream 1.0kb upstream 6388 true scaffold_7: 22593040-22599427 Setaria italica
Seita.7G133500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 22593040-22594039 Setaria italica
Seita.7G133500 1.0kb downstream 1.0kb downstream 6388 true scaffold_7: 22594040-22600427 Setaria italica
Seita.7G133500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 22599428-22600427 Setaria italica
Seita.7G133500 2.0kb upstream 2.0kb upstream 7388 true scaffold_7: 22592040-22599427 Setaria italica
Seita.7G133500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 22592040-22594039 Setaria italica
Seita.7G133500 2.0kb downstream 2.0kb downstream 7388 true scaffold_7: 22594040-22601427 Setaria italica
Seita.7G133500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 22599428-22601427 Setaria italica
Seita.7G133500 5.0kb upstream 5.0kb upstream 10388 true scaffold_7: 22589040-22599427 Setaria italica
Seita.7G133500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 22589040-22594039 Setaria italica
Seita.7G133500 5.0kb downstream 5.0kb downstream 10388 true scaffold_7: 22594040-22604427 Setaria italica
Seita.7G133500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 22599428-22604427 Setaria italica
Seita.7G133500 10.0kb upstream 10.0kb upstream 15388 true scaffold_7: 22584040-22599427 Setaria italica
Seita.7G133500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 22584040-22594039 Setaria italica
Seita.7G133500 10.0kb downstream 10.0kb downstream 15388 true scaffold_7: 22594040-22609427 Setaria italica
Seita.7G133500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 22599428-22609427 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179127 5267 Panicoideae View MSA
124571074 5269 Grass View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.009        
cufflinks 10.327       High
cufflinks 0.625       Low
cufflinks 0.655       Low
cufflinks 2.738        
cufflinks 10.234       High
cufflinks 5.758        
cufflinks 2.63        
cufflinks 3.929        
cufflinks 2.32        
cufflinks 3.636        
cufflinks 0.851       Low
cufflinks 3.426        
cufflinks 0.383       Low
cufflinks 1.809        
cufflinks 3.988        
cufflinks 1.975        
cufflinks 5.322        
cufflinks 0.459       Low
cufflinks 1.63        

0 Strain