Gene : Seita.7G138900 S. italica v2.2
Defline:  (1 of 1) PTHR32175:SF2 - SURFEIT LOCUS PROTEIN 2 Genomic Order:  1389
Name:  ? Seita.7G138900 Secondary Identifier:  ? PAC:32705298
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G138900 0.5kb upstream 0.5kb upstream 4307 true scaffold_7: 22986832-22991138 Setaria italica
Seita.7G138900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 22986832-22987331 Setaria italica
Seita.7G138900 0.5kb downstream 0.5kb downstream 4307 true scaffold_7: 22987332-22991638 Setaria italica
Seita.7G138900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 22991139-22991638 Setaria italica
Seita.7G138900 1.0kb upstream 1.0kb upstream 4807 true scaffold_7: 22986332-22991138 Setaria italica
Seita.7G138900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 22986332-22987331 Setaria italica
Seita.7G138900 1.0kb downstream 1.0kb downstream 4807 true scaffold_7: 22987332-22992138 Setaria italica
Seita.7G138900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 22991139-22992138 Setaria italica
Seita.7G138900 2.0kb upstream 2.0kb upstream 5807 true scaffold_7: 22985332-22991138 Setaria italica
Seita.7G138900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 22985332-22987331 Setaria italica
Seita.7G138900 2.0kb downstream 2.0kb downstream 5807 true scaffold_7: 22987332-22993138 Setaria italica
Seita.7G138900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 22991139-22993138 Setaria italica
Seita.7G138900 5.0kb upstream 5.0kb upstream 8807 true scaffold_7: 22982332-22991138 Setaria italica
Seita.7G138900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 22982332-22987331 Setaria italica
Seita.7G138900 5.0kb downstream 5.0kb downstream 8807 true scaffold_7: 22987332-22996138 Setaria italica
Seita.7G138900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 22991139-22996138 Setaria italica
Seita.7G138900 10.0kb upstream 10.0kb upstream 13807 true scaffold_7: 22977332-22991138 Setaria italica
Seita.7G138900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 22977332-22987331 Setaria italica
Seita.7G138900 10.0kb downstream 10.0kb downstream 13807 true scaffold_7: 22987332-23001138 Setaria italica
Seita.7G138900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 22991139-23001138 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190727 5267 Panicoideae View MSA
124572635 5269 Grass View MSA
122045153 5273 Angiosperm View MSA
121344193 5274 Embryophyte View MSA
123425861 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.973        
cufflinks 2.737        
cufflinks 1.447       Low
cufflinks 1.125       Low
cufflinks 1.515        
cufflinks 3.359       High
cufflinks 2.307        
cufflinks 2.917       High
cufflinks 2.58        
cufflinks 1.98        
cufflinks 1.908        
cufflinks 2.627        
cufflinks 1.667        
cufflinks 1.654        
cufflinks 2.35        
cufflinks 1.398       Low
cufflinks 3.046       High
cufflinks 1.637        
cufflinks 1.239       Low
cufflinks 2.557        

0 Strain