Gene : Seita.7G142500 S. italica v2.2
Defline:  (1 of 1) PTHR13164//PTHR13164:SF6 - CALICYLIN BINDING PROTEIN Genomic Order:  1425
Name:  ? Seita.7G142500 Secondary Identifier:  ? PAC:32703711
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G142500 0.5kb upstream 0.5kb upstream 7877 true scaffold_7: 23202722-23210598 Setaria italica
Seita.7G142500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23210099-23210598 Setaria italica
Seita.7G142500 0.5kb downstream 0.5kb downstream 7877 true scaffold_7: 23202222-23210098 Setaria italica
Seita.7G142500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23202222-23202721 Setaria italica
Seita.7G142500 1.0kb upstream 1.0kb upstream 8377 true scaffold_7: 23202722-23211098 Setaria italica
Seita.7G142500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23210099-23211098 Setaria italica
Seita.7G142500 1.0kb downstream 1.0kb downstream 8377 true scaffold_7: 23201722-23210098 Setaria italica
Seita.7G142500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23201722-23202721 Setaria italica
Seita.7G142500 2.0kb upstream 2.0kb upstream 9377 true scaffold_7: 23202722-23212098 Setaria italica
Seita.7G142500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23210099-23212098 Setaria italica
Seita.7G142500 2.0kb downstream 2.0kb downstream 9377 true scaffold_7: 23200722-23210098 Setaria italica
Seita.7G142500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23200722-23202721 Setaria italica
Seita.7G142500 5.0kb upstream 5.0kb upstream 12377 true scaffold_7: 23202722-23215098 Setaria italica
Seita.7G142500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23210099-23215098 Setaria italica
Seita.7G142500 5.0kb downstream 5.0kb downstream 12377 true scaffold_7: 23197722-23210098 Setaria italica
Seita.7G142500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23197722-23202721 Setaria italica
Seita.7G142500 10.0kb upstream 10.0kb upstream 17377 true scaffold_7: 23202722-23220098 Setaria italica
Seita.7G142500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23210099-23220098 Setaria italica
Seita.7G142500 10.0kb downstream 10.0kb downstream 17377 true scaffold_7: 23192722-23210098 Setaria italica
Seita.7G142500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23192722-23202721 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192954 5267 Panicoideae View MSA
124585663 5269 Grass View MSA
122042859 5273 Angiosperm View MSA
121310036 5274 Embryophyte View MSA
123347639 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.591       High
cufflinks 8.63        
cufflinks 5.853        
cufflinks 4.73       Low
cufflinks 6.047        
cufflinks 8.655        
cufflinks 6.72        
cufflinks 4.594       Low
cufflinks 5.946        
cufflinks 4.169       Low
cufflinks 9.482       High
cufflinks 6.697        
cufflinks 6.249        
cufflinks 5.331        
cufflinks 8.841        
cufflinks 9.368       High
cufflinks 6.353        
cufflinks 11.512     High High
cufflinks 3.826       Low
cufflinks 5.848        

0 Strain