Gene : Seita.7G144900 S. italica v2.2
Defline:  (1 of 2) PTHR10535//PTHR10535:SF4 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Genomic Order:  1449
Name:  ? Seita.7G144900 Secondary Identifier:  ? PAC:32704330
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G144900 0.5kb upstream 0.5kb upstream 4275 true scaffold_7: 23352979-23357253 Setaria italica
Seita.7G144900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23356754-23357253 Setaria italica
Seita.7G144900 0.5kb downstream 0.5kb downstream 4275 true scaffold_7: 23352479-23356753 Setaria italica
Seita.7G144900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23352479-23352978 Setaria italica
Seita.7G144900 1.0kb upstream 1.0kb upstream 4775 true scaffold_7: 23352979-23357753 Setaria italica
Seita.7G144900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23356754-23357753 Setaria italica
Seita.7G144900 1.0kb downstream 1.0kb downstream 4775 true scaffold_7: 23351979-23356753 Setaria italica
Seita.7G144900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23351979-23352978 Setaria italica
Seita.7G144900 2.0kb upstream 2.0kb upstream 5775 true scaffold_7: 23352979-23358753 Setaria italica
Seita.7G144900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23356754-23358753 Setaria italica
Seita.7G144900 2.0kb downstream 2.0kb downstream 5775 true scaffold_7: 23350979-23356753 Setaria italica
Seita.7G144900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23350979-23352978 Setaria italica
Seita.7G144900 5.0kb upstream 5.0kb upstream 8775 true scaffold_7: 23352979-23361753 Setaria italica
Seita.7G144900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23356754-23361753 Setaria italica
Seita.7G144900 5.0kb downstream 5.0kb downstream 8775 true scaffold_7: 23347979-23356753 Setaria italica
Seita.7G144900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23347979-23352978 Setaria italica
Seita.7G144900 10.0kb upstream 10.0kb upstream 13775 true scaffold_7: 23352979-23366753 Setaria italica
Seita.7G144900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23356754-23366753 Setaria italica
Seita.7G144900 10.0kb downstream 10.0kb downstream 13775 true scaffold_7: 23342979-23356753 Setaria italica
Seita.7G144900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23342979-23352978 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185204 5267 Panicoideae View MSA
124579078 5269 Grass View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.961        
cufflinks 5.342        
cufflinks 1.48       Low
cufflinks 1.384       Low
cufflinks 1.754       Low
cufflinks 4.962        
cufflinks 2.949        
cufflinks 4.493        
cufflinks 3.196        
cufflinks 11.779       High
cufflinks 6.07        
cufflinks 3.034        
cufflinks 2.636        
cufflinks 2.542        
cufflinks 3.703        
cufflinks 3.96        
cufflinks 4.05        
cufflinks 9.077       High
cufflinks 1.132       Low
cufflinks 3.546        

0 Strain