Gene : Seita.7G143500 S. italica v2.2
Defline:  (1 of 2) PTHR14145:SF1 - 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 Genomic Order:  1435
Name:  ? Seita.7G143500 Secondary Identifier:  ? PAC:32705978
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G143500 0.5kb upstream 0.5kb upstream 3212 true scaffold_7: 23258011-23261222 Setaria italica
Seita.7G143500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23258011-23258510 Setaria italica
Seita.7G143500 0.5kb downstream 0.5kb downstream 3212 true scaffold_7: 23258511-23261722 Setaria italica
Seita.7G143500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23261223-23261722 Setaria italica
Seita.7G143500 1.0kb upstream 1.0kb upstream 3712 true scaffold_7: 23257511-23261222 Setaria italica
Seita.7G143500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23257511-23258510 Setaria italica
Seita.7G143500 1.0kb downstream 1.0kb downstream 3712 true scaffold_7: 23258511-23262222 Setaria italica
Seita.7G143500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23261223-23262222 Setaria italica
Seita.7G143500 2.0kb upstream 2.0kb upstream 4712 true scaffold_7: 23256511-23261222 Setaria italica
Seita.7G143500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23256511-23258510 Setaria italica
Seita.7G143500 2.0kb downstream 2.0kb downstream 4712 true scaffold_7: 23258511-23263222 Setaria italica
Seita.7G143500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23261223-23263222 Setaria italica
Seita.7G143500 5.0kb upstream 5.0kb upstream 7712 true scaffold_7: 23253511-23261222 Setaria italica
Seita.7G143500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23253511-23258510 Setaria italica
Seita.7G143500 5.0kb downstream 5.0kb downstream 7712 true scaffold_7: 23258511-23266222 Setaria italica
Seita.7G143500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23261223-23266222 Setaria italica
Seita.7G143500 10.0kb upstream 10.0kb upstream 12712 true scaffold_7: 23248511-23261222 Setaria italica
Seita.7G143500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23248511-23258510 Setaria italica
Seita.7G143500 10.0kb downstream 10.0kb downstream 12712 true scaffold_7: 23258511-23271222 Setaria italica
Seita.7G143500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23261223-23271222 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179291 5267 Panicoideae View MSA
124584685 5269 Grass View MSA
122047339 5273 Angiosperm View MSA
121344552 5274 Embryophyte View MSA
123425003 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.082     High  
cufflinks 38.383     High  
cufflinks 19.323     High Low
cufflinks 19.069     High Low
cufflinks 17.792     High Low
cufflinks 37.618     High  
cufflinks 23.67     High  
cufflinks 27.384     High  
cufflinks 23.186     High  
cufflinks 38.421     High  
cufflinks 34.011     High  
cufflinks 42.831     High  
cufflinks 46.125     High High
cufflinks 24.538     High  
cufflinks 56.513     High High
cufflinks 13.494     High Low
cufflinks 51.23     High High
cufflinks 25.418     High  
cufflinks 20.859     High  
cufflinks 53.7     High High

0 Strain