Gene : Seita.7G144000 S. italica v2.2
Defline:  (1 of 1) PF09588 - YqaJ-like viral recombinase domain (YqaJ) Genomic Order:  1440
Name:  ? Seita.7G144000 Secondary Identifier:  ? PAC:32702107
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G144000 0.5kb upstream 0.5kb upstream 3402 true scaffold_7: 23288011-23291412 Setaria italica
Seita.7G144000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23288011-23288510 Setaria italica
Seita.7G144000 0.5kb downstream 0.5kb downstream 3402 true scaffold_7: 23288511-23291912 Setaria italica
Seita.7G144000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23291413-23291912 Setaria italica
Seita.7G144000 1.0kb upstream 1.0kb upstream 3902 true scaffold_7: 23287511-23291412 Setaria italica
Seita.7G144000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23287511-23288510 Setaria italica
Seita.7G144000 1.0kb downstream 1.0kb downstream 3902 true scaffold_7: 23288511-23292412 Setaria italica
Seita.7G144000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23291413-23292412 Setaria italica
Seita.7G144000 2.0kb upstream 2.0kb upstream 4902 true scaffold_7: 23286511-23291412 Setaria italica
Seita.7G144000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23286511-23288510 Setaria italica
Seita.7G144000 2.0kb downstream 2.0kb downstream 4902 true scaffold_7: 23288511-23293412 Setaria italica
Seita.7G144000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23291413-23293412 Setaria italica
Seita.7G144000 5.0kb upstream 5.0kb upstream 7902 true scaffold_7: 23283511-23291412 Setaria italica
Seita.7G144000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23283511-23288510 Setaria italica
Seita.7G144000 5.0kb downstream 5.0kb downstream 7902 true scaffold_7: 23288511-23296412 Setaria italica
Seita.7G144000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23291413-23296412 Setaria italica
Seita.7G144000 10.0kb upstream 10.0kb upstream 12902 true scaffold_7: 23278511-23291412 Setaria italica
Seita.7G144000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23278511-23288510 Setaria italica
Seita.7G144000 10.0kb downstream 10.0kb downstream 12902 true scaffold_7: 23288511-23301412 Setaria italica
Seita.7G144000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23291413-23301412 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181831 5267 Panicoideae View MSA
124572076 5269 Grass View MSA
122045989 5273 Angiosperm View MSA
123429076 5275 Viridiplantae View MSA
121346090 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.347       Low
cufflinks 3.769        
cufflinks 4.673        
cufflinks 2.856       Low
cufflinks 4.306        
cufflinks 4.533        
cufflinks 5.532        
cufflinks 6.189        
cufflinks 7.666       High
cufflinks 4.265        
cufflinks 2.804       Low
cufflinks 7.486       High
cufflinks 6.031        
cufflinks 6.881       High
cufflinks 5.899        
cufflinks 4.004        
cufflinks 2.952       Low
cufflinks 6.511       High
cufflinks 3.781        
cufflinks 4.164        

0 Strain