Gene : Seita.7G147400 S. italica v2.2
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1474
Name:  ? Seita.7G147400 Secondary Identifier:  ? PAC:32705954
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CHLOROPHYLL-SYN Setaria italica pathologic  
Sitalica HEME-BIOSYNTHESIS-II Setaria italica pathologic  
Sitalica PWY-5918 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G147400 0.5kb upstream 0.5kb upstream 6445 true scaffold_7: 23526055-23532499 Setaria italica
Seita.7G147400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 23526055-23526554 Setaria italica
Seita.7G147400 0.5kb downstream 0.5kb downstream 6445 true scaffold_7: 23526555-23532999 Setaria italica
Seita.7G147400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 23532500-23532999 Setaria italica
Seita.7G147400 1.0kb upstream 1.0kb upstream 6945 true scaffold_7: 23525555-23532499 Setaria italica
Seita.7G147400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 23525555-23526554 Setaria italica
Seita.7G147400 1.0kb downstream 1.0kb downstream 6945 true scaffold_7: 23526555-23533499 Setaria italica
Seita.7G147400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 23532500-23533499 Setaria italica
Seita.7G147400 2.0kb upstream 2.0kb upstream 7945 true scaffold_7: 23524555-23532499 Setaria italica
Seita.7G147400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 23524555-23526554 Setaria italica
Seita.7G147400 2.0kb downstream 2.0kb downstream 7945 true scaffold_7: 23526555-23534499 Setaria italica
Seita.7G147400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 23532500-23534499 Setaria italica
Seita.7G147400 5.0kb upstream 5.0kb upstream 10945 true scaffold_7: 23521555-23532499 Setaria italica
Seita.7G147400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 23521555-23526554 Setaria italica
Seita.7G147400 5.0kb downstream 5.0kb downstream 10945 true scaffold_7: 23526555-23537499 Setaria italica
Seita.7G147400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 23532500-23537499 Setaria italica
Seita.7G147400 10.0kb upstream 10.0kb upstream 15945 true scaffold_7: 23516555-23532499 Setaria italica
Seita.7G147400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 23516555-23526554 Setaria italica
Seita.7G147400 10.0kb downstream 10.0kb downstream 15945 true scaffold_7: 23526555-23542499 Setaria italica
Seita.7G147400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 23532500-23542499 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175388 5267 Panicoideae View MSA
124571496 5269 Grass View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.66        
cufflinks 3.8        
cufflinks 1.181       Low
cufflinks 1.205       Low
cufflinks 2.582        
cufflinks 3.916        
cufflinks 3.404        
cufflinks 5.189        
cufflinks 7.306       High
cufflinks 4.844        
cufflinks 3.268        
cufflinks 4.759        
cufflinks 3.721        
cufflinks 1.263       Low
cufflinks 3.437        
cufflinks 2.63        
cufflinks 3.504        
cufflinks 4.031        
cufflinks 0.851       Low
cufflinks 2.925        

0 Strain