Gene : Seita.7G229000 S. italica v2.2
Defline:  (1 of 1) PTHR10459:SF72 - DNA LIGASE 4 Genomic Order:  2290
Name:  ? Seita.7G229000 Secondary Identifier:  ? PAC:32702154
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G229000 0.5kb upstream 0.5kb upstream 9073 true scaffold_7: 29295512-29304584 Setaria italica
Seita.7G229000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 29304085-29304584 Setaria italica
Seita.7G229000 0.5kb downstream 0.5kb downstream 9073 true scaffold_7: 29295012-29304084 Setaria italica
Seita.7G229000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 29295012-29295511 Setaria italica
Seita.7G229000 1.0kb upstream 1.0kb upstream 9573 true scaffold_7: 29295512-29305084 Setaria italica
Seita.7G229000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 29304085-29305084 Setaria italica
Seita.7G229000 1.0kb downstream 1.0kb downstream 9573 true scaffold_7: 29294512-29304084 Setaria italica
Seita.7G229000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 29294512-29295511 Setaria italica
Seita.7G229000 2.0kb upstream 2.0kb upstream 10573 true scaffold_7: 29295512-29306084 Setaria italica
Seita.7G229000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 29304085-29306084 Setaria italica
Seita.7G229000 2.0kb downstream 2.0kb downstream 10573 true scaffold_7: 29293512-29304084 Setaria italica
Seita.7G229000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 29293512-29295511 Setaria italica
Seita.7G229000 5.0kb upstream 5.0kb upstream 13573 true scaffold_7: 29295512-29309084 Setaria italica
Seita.7G229000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 29304085-29309084 Setaria italica
Seita.7G229000 5.0kb downstream 5.0kb downstream 13573 true scaffold_7: 29290512-29304084 Setaria italica
Seita.7G229000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 29290512-29295511 Setaria italica
Seita.7G229000 10.0kb upstream 10.0kb upstream 18573 true scaffold_7: 29295512-29314084 Setaria italica
Seita.7G229000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 29304085-29314084 Setaria italica
Seita.7G229000 10.0kb downstream 10.0kb downstream 18573 true scaffold_7: 29285512-29304084 Setaria italica
Seita.7G229000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 29285512-29295511 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190587 5267 Panicoideae View MSA
124581424 5269 Grass View MSA
122045949 5273 Angiosperm View MSA
121346093 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.643        
cufflinks 3.142       Low
cufflinks 7.837        
cufflinks 6.271        
cufflinks 4.136        
cufflinks 2.921       Low
cufflinks 4.777        
cufflinks 4.5        
cufflinks 2.35       Low
cufflinks 3.574       Low
cufflinks 6.228        
cufflinks 8.485       High
cufflinks 8.025        
cufflinks 7.468        
cufflinks 8.124        
cufflinks 7.508        
cufflinks 8.419       High
cufflinks 6.434        
cufflinks 4.359        
cufflinks 7.583        

0 Strain