Gene : Seita.7G230800 S. italica v2.2
Defline:  (1 of 1) PTHR10457:SF11 - GALACTURONOKINASE Genomic Order:  2308
Name:  ? Seita.7G230800 Secondary Identifier:  ? PAC:32705883
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G230800 0.5kb upstream 0.5kb upstream 5725 true scaffold_7: 29440219-29445943 Setaria italica
Seita.7G230800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 29445444-29445943 Setaria italica
Seita.7G230800 0.5kb downstream 0.5kb downstream 5725 true scaffold_7: 29439719-29445443 Setaria italica
Seita.7G230800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 29439719-29440218 Setaria italica
Seita.7G230800 1.0kb upstream 1.0kb upstream 6225 true scaffold_7: 29440219-29446443 Setaria italica
Seita.7G230800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 29445444-29446443 Setaria italica
Seita.7G230800 1.0kb downstream 1.0kb downstream 6225 true scaffold_7: 29439219-29445443 Setaria italica
Seita.7G230800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 29439219-29440218 Setaria italica
Seita.7G230800 2.0kb upstream 2.0kb upstream 7225 true scaffold_7: 29440219-29447443 Setaria italica
Seita.7G230800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 29445444-29447443 Setaria italica
Seita.7G230800 2.0kb downstream 2.0kb downstream 7225 true scaffold_7: 29438219-29445443 Setaria italica
Seita.7G230800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 29438219-29440218 Setaria italica
Seita.7G230800 5.0kb upstream 5.0kb upstream 10225 true scaffold_7: 29440219-29450443 Setaria italica
Seita.7G230800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 29445444-29450443 Setaria italica
Seita.7G230800 5.0kb downstream 5.0kb downstream 10225 true scaffold_7: 29435219-29445443 Setaria italica
Seita.7G230800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 29435219-29440218 Setaria italica
Seita.7G230800 10.0kb upstream 10.0kb upstream 15225 true scaffold_7: 29440219-29455443 Setaria italica
Seita.7G230800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 29445444-29455443 Setaria italica
Seita.7G230800 10.0kb downstream 10.0kb downstream 15225 true scaffold_7: 29430219-29445443 Setaria italica
Seita.7G230800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 29430219-29440218 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190448 5267 Panicoideae View MSA
124569462 5269 Grass View MSA
122041803 5273 Angiosperm View MSA
121344936 5274 Embryophyte View MSA
123425309 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.509        
cufflinks 7.562        
cufflinks 2.819        
cufflinks 4.668        
cufflinks 4.632        
cufflinks 6.235        
cufflinks 7.797        
cufflinks 4.141        
cufflinks 5.871        
cufflinks 3.798        
cufflinks 4.289        
cufflinks 2.835        
cufflinks 3.393        
cufflinks 0.416       Low
cufflinks 2.343        
cufflinks 9.705       High
cufflinks 2.586        
cufflinks 10.09       High
cufflinks 1.328       Low
cufflinks 3.373        

0 Strain