Gene : Seita.7G232700 S. italica v2.2
Defline:  (1 of 2) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  2327
Name:  ? Seita.7G232700 Secondary Identifier:  ? PAC:32702342
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CHLOROPHYLL-SYN Setaria italica pathologic  
Sitalica HEME-BIOSYNTHESIS-II Setaria italica pathologic  
Sitalica PWY-5918 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G232700 0.5kb upstream 0.5kb upstream 4382 true scaffold_7: 29617667-29622048 Setaria italica
Seita.7G232700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 29617667-29618166 Setaria italica
Seita.7G232700 0.5kb downstream 0.5kb downstream 4382 true scaffold_7: 29618167-29622548 Setaria italica
Seita.7G232700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 29622049-29622548 Setaria italica
Seita.7G232700 1.0kb upstream 1.0kb upstream 4882 true scaffold_7: 29617167-29622048 Setaria italica
Seita.7G232700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 29617167-29618166 Setaria italica
Seita.7G232700 1.0kb downstream 1.0kb downstream 4882 true scaffold_7: 29618167-29623048 Setaria italica
Seita.7G232700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 29622049-29623048 Setaria italica
Seita.7G232700 2.0kb upstream 2.0kb upstream 5882 true scaffold_7: 29616167-29622048 Setaria italica
Seita.7G232700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 29616167-29618166 Setaria italica
Seita.7G232700 2.0kb downstream 2.0kb downstream 5882 true scaffold_7: 29618167-29624048 Setaria italica
Seita.7G232700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 29622049-29624048 Setaria italica
Seita.7G232700 5.0kb upstream 5.0kb upstream 8882 true scaffold_7: 29613167-29622048 Setaria italica
Seita.7G232700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 29613167-29618166 Setaria italica
Seita.7G232700 5.0kb downstream 5.0kb downstream 8882 true scaffold_7: 29618167-29627048 Setaria italica
Seita.7G232700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 29622049-29627048 Setaria italica
Seita.7G232700 10.0kb upstream 10.0kb upstream 13882 true scaffold_7: 29608167-29622048 Setaria italica
Seita.7G232700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 29608167-29618166 Setaria italica
Seita.7G232700 10.0kb downstream 10.0kb downstream 13882 true scaffold_7: 29618167-29632048 Setaria italica
Seita.7G232700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 29622049-29632048 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183301 5267 Panicoideae View MSA
124572100 5269 Grass View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.857     High  
cufflinks 20.734     High  
cufflinks 14.031     High Low
cufflinks 12.57     High Low
cufflinks 37.662     High  
cufflinks 23.126     High  
cufflinks 62.061     High High
cufflinks 68.499     High High
cufflinks 81.816     High High
cufflinks 27.633     High  
cufflinks 23.11     High  
cufflinks 23.875     High  
cufflinks 14.008     High Low
cufflinks 18.563     High  
cufflinks 25.814     High  
cufflinks 48.139     High High
cufflinks 20.911     High  
cufflinks 23.284     High  
cufflinks 13.588     High Low
cufflinks 14.092       Low

0 Strain