Gene : Seita.7G234800 S. italica v2.2
Defline:  (1 of 3) PTHR10744//PTHR10744:SF10 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Genomic Order:  2348
Name:  ? Seita.7G234800 Secondary Identifier:  ? PAC:32703049
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G234800 0.5kb upstream 0.5kb upstream 3002 true scaffold_7: 29750219-29753220 Setaria italica
Seita.7G234800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 29750219-29750718 Setaria italica
Seita.7G234800 0.5kb downstream 0.5kb downstream 3002 true scaffold_7: 29750719-29753720 Setaria italica
Seita.7G234800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 29753221-29753720 Setaria italica
Seita.7G234800 1.0kb upstream 1.0kb upstream 3502 true scaffold_7: 29749719-29753220 Setaria italica
Seita.7G234800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 29749719-29750718 Setaria italica
Seita.7G234800 1.0kb downstream 1.0kb downstream 3502 true scaffold_7: 29750719-29754220 Setaria italica
Seita.7G234800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 29753221-29754220 Setaria italica
Seita.7G234800 2.0kb upstream 2.0kb upstream 4502 true scaffold_7: 29748719-29753220 Setaria italica
Seita.7G234800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 29748719-29750718 Setaria italica
Seita.7G234800 2.0kb downstream 2.0kb downstream 4502 true scaffold_7: 29750719-29755220 Setaria italica
Seita.7G234800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 29753221-29755220 Setaria italica
Seita.7G234800 5.0kb upstream 5.0kb upstream 7502 true scaffold_7: 29745719-29753220 Setaria italica
Seita.7G234800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 29745719-29750718 Setaria italica
Seita.7G234800 5.0kb downstream 5.0kb downstream 7502 true scaffold_7: 29750719-29758220 Setaria italica
Seita.7G234800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 29753221-29758220 Setaria italica
Seita.7G234800 10.0kb upstream 10.0kb upstream 12502 true scaffold_7: 29740719-29753220 Setaria italica
Seita.7G234800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 29740719-29750718 Setaria italica
Seita.7G234800 10.0kb downstream 10.0kb downstream 12502 true scaffold_7: 29750719-29763220 Setaria italica
Seita.7G234800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 29753221-29763220 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181080 5267 Panicoideae View MSA
124587883 5269 Grass View MSA
122044220 5273 Angiosperm View MSA
121344694 5274 Embryophyte View MSA
123428242 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 86.342     High  
cufflinks 75.458     High  
cufflinks 19.473     High Low
cufflinks 18.104     High Low
cufflinks 25.95     High Low
cufflinks 90.076     High  
cufflinks 73.729     High  
cufflinks 112.954     High High
cufflinks 92.505     High  
cufflinks 156.553     High High
cufflinks 84.895     High  
cufflinks 66.086     High  
cufflinks 57.189     High  
cufflinks 31.781     High  
cufflinks 83.161     High  
cufflinks 39.708     High  
cufflinks 100.921     High  
cufflinks 32.286     High  
cufflinks 27.513     High Low
cufflinks 86.612     High  

0 Strain