Gene : Seita.7G238800 S. italica v2.2
Defline:  (1 of 1) PTHR23133 - IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 Genomic Order:  2388
Name:  ? Seita.7G238800 Secondary Identifier:  ? PAC:32705396
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HISTSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G238800 0.5kb upstream 0.5kb upstream 4244 true scaffold_7: 30093092-30097335 Setaria italica
Seita.7G238800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30093092-30093591 Setaria italica
Seita.7G238800 0.5kb downstream 0.5kb downstream 4244 true scaffold_7: 30093592-30097835 Setaria italica
Seita.7G238800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30097336-30097835 Setaria italica
Seita.7G238800 1.0kb upstream 1.0kb upstream 4744 true scaffold_7: 30092592-30097335 Setaria italica
Seita.7G238800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30092592-30093591 Setaria italica
Seita.7G238800 1.0kb downstream 1.0kb downstream 4744 true scaffold_7: 30093592-30098335 Setaria italica
Seita.7G238800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30097336-30098335 Setaria italica
Seita.7G238800 2.0kb upstream 2.0kb upstream 5744 true scaffold_7: 30091592-30097335 Setaria italica
Seita.7G238800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30091592-30093591 Setaria italica
Seita.7G238800 2.0kb downstream 2.0kb downstream 5744 true scaffold_7: 30093592-30099335 Setaria italica
Seita.7G238800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30097336-30099335 Setaria italica
Seita.7G238800 5.0kb upstream 5.0kb upstream 8744 true scaffold_7: 30088592-30097335 Setaria italica
Seita.7G238800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30088592-30093591 Setaria italica
Seita.7G238800 5.0kb downstream 5.0kb downstream 8744 true scaffold_7: 30093592-30102335 Setaria italica
Seita.7G238800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30097336-30102335 Setaria italica
Seita.7G238800 10.0kb upstream 10.0kb upstream 13744 true scaffold_7: 30083592-30097335 Setaria italica
Seita.7G238800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30083592-30093591 Setaria italica
Seita.7G238800 10.0kb downstream 10.0kb downstream 13744 true scaffold_7: 30093592-30107335 Setaria italica
Seita.7G238800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30097336-30107335 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195446 5267 Panicoideae View MSA
124577748 5269 Grass View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.106       Low
cufflinks 6.58        
cufflinks 8.364        
cufflinks 7.5        
cufflinks 8.104        
cufflinks 6.637        
cufflinks 7.467        
cufflinks 9.269       High
cufflinks 8.543        
cufflinks 6.385        
cufflinks 5.51       Low
cufflinks 7.36        
cufflinks 9.099        
cufflinks 11.59       High
cufflinks 6.736        
cufflinks 6.381        
cufflinks 8.47        
cufflinks 4.688       Low
cufflinks 7.679        
cufflinks 8.469        

0 Strain