Gene : Seita.7G242800 S. italica v2.2
Defline:  (1 of 1) PTHR10578//PTHR10578:SF74 - S -2-HYDROXY-ACID OXIDASE-RELATED Genomic Order:  2428
Name:  ? Seita.7G242800 Secondary Identifier:  ? PAC:32705200
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G242800 0.5kb upstream 0.5kb upstream 4701 true scaffold_7: 30354082-30358782 Setaria italica
Seita.7G242800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30354082-30354581 Setaria italica
Seita.7G242800 0.5kb downstream 0.5kb downstream 4701 true scaffold_7: 30354582-30359282 Setaria italica
Seita.7G242800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30358783-30359282 Setaria italica
Seita.7G242800 1.0kb upstream 1.0kb upstream 5201 true scaffold_7: 30353582-30358782 Setaria italica
Seita.7G242800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30353582-30354581 Setaria italica
Seita.7G242800 1.0kb downstream 1.0kb downstream 5201 true scaffold_7: 30354582-30359782 Setaria italica
Seita.7G242800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30358783-30359782 Setaria italica
Seita.7G242800 2.0kb upstream 2.0kb upstream 6201 true scaffold_7: 30352582-30358782 Setaria italica
Seita.7G242800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30352582-30354581 Setaria italica
Seita.7G242800 2.0kb downstream 2.0kb downstream 6201 true scaffold_7: 30354582-30360782 Setaria italica
Seita.7G242800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30358783-30360782 Setaria italica
Seita.7G242800 5.0kb upstream 5.0kb upstream 9201 true scaffold_7: 30349582-30358782 Setaria italica
Seita.7G242800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30349582-30354581 Setaria italica
Seita.7G242800 5.0kb downstream 5.0kb downstream 9201 true scaffold_7: 30354582-30363782 Setaria italica
Seita.7G242800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30358783-30363782 Setaria italica
Seita.7G242800 10.0kb upstream 10.0kb upstream 14201 true scaffold_7: 30344582-30358782 Setaria italica
Seita.7G242800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30344582-30354581 Setaria italica
Seita.7G242800 10.0kb downstream 10.0kb downstream 14201 true scaffold_7: 30354582-30368782 Setaria italica
Seita.7G242800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30358783-30368782 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189781 5267 Panicoideae View MSA
124570944 5269 Grass View MSA
122046790 5273 Angiosperm View MSA
121345614 5274 Embryophyte View MSA
123426843 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.499        
cufflinks 1.76        
cufflinks 0.239       Low
cufflinks 0.255       Low
cufflinks 0.174       Low
cufflinks 1.454        
cufflinks 1.352        
cufflinks 1.517        
cufflinks 0.707        
cufflinks 19.742     High High
cufflinks 12.301       High
cufflinks 13.084       High
cufflinks 9.135        
cufflinks 0.254       Low
cufflinks 14.162     High High
cufflinks 0.693        
cufflinks 13.244       High
cufflinks 3.482        
cufflinks 0.547        
cufflinks 7.336        

0 Strain