Gene : Seita.7G243000 S. italica v2.2
Defline:  (1 of 1) PTHR12013 - SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN Genomic Order:  2430
Name:  ? Seita.7G243000 Secondary Identifier:  ? PAC:32705536
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G243000 0.5kb upstream 0.5kb upstream 3389 true scaffold_7: 30368449-30371837 Setaria italica
Seita.7G243000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30368449-30368948 Setaria italica
Seita.7G243000 0.5kb downstream 0.5kb downstream 3389 true scaffold_7: 30368949-30372337 Setaria italica
Seita.7G243000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30371838-30372337 Setaria italica
Seita.7G243000 1.0kb upstream 1.0kb upstream 3889 true scaffold_7: 30367949-30371837 Setaria italica
Seita.7G243000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30367949-30368948 Setaria italica
Seita.7G243000 1.0kb downstream 1.0kb downstream 3889 true scaffold_7: 30368949-30372837 Setaria italica
Seita.7G243000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30371838-30372837 Setaria italica
Seita.7G243000 2.0kb upstream 2.0kb upstream 4889 true scaffold_7: 30366949-30371837 Setaria italica
Seita.7G243000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30366949-30368948 Setaria italica
Seita.7G243000 2.0kb downstream 2.0kb downstream 4889 true scaffold_7: 30368949-30373837 Setaria italica
Seita.7G243000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30371838-30373837 Setaria italica
Seita.7G243000 5.0kb upstream 5.0kb upstream 7889 true scaffold_7: 30363949-30371837 Setaria italica
Seita.7G243000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30363949-30368948 Setaria italica
Seita.7G243000 5.0kb downstream 5.0kb downstream 7889 true scaffold_7: 30368949-30376837 Setaria italica
Seita.7G243000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30371838-30376837 Setaria italica
Seita.7G243000 10.0kb upstream 10.0kb upstream 12889 true scaffold_7: 30358949-30371837 Setaria italica
Seita.7G243000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30358949-30368948 Setaria italica
Seita.7G243000 10.0kb downstream 10.0kb downstream 12889 true scaffold_7: 30368949-30381837 Setaria italica
Seita.7G243000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30371838-30381837 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176347 5267 Panicoideae View MSA
124574905 5269 Grass View MSA
122043895 5273 Angiosperm View MSA
121349009 5274 Embryophyte View MSA
123423834 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.86        
cufflinks 12.481       High
cufflinks 3.978       Low
cufflinks 3.16       Low
cufflinks 4.453        
cufflinks 13.301     High High
cufflinks 5.392        
cufflinks 11.223        
cufflinks 7.492        
cufflinks 10.396        
cufflinks 7.625        
cufflinks 8.989        
cufflinks 10.424        
cufflinks 6.185        
cufflinks 12.189       High
cufflinks 2.962       Low
cufflinks 13.818       High
cufflinks 2.797       Low
cufflinks 4.845        
cufflinks 12.213       High

0 Strain