Gene : Seita.7G243300 S. italica v2.2
Defline:  (1 of 1) 2.1.2.10 - Aminomethyltransferase / Tetrahydrofolate aminomethyltransferase Genomic Order:  2433
Name:  ? Seita.7G243300 Secondary Identifier:  ? PAC:32701875
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYCLEAV-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G243300 0.5kb upstream 0.5kb upstream 3873 true scaffold_7: 30384033-30387905 Setaria italica
Seita.7G243300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30384033-30384532 Setaria italica
Seita.7G243300 0.5kb downstream 0.5kb downstream 3873 true scaffold_7: 30384533-30388405 Setaria italica
Seita.7G243300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30387906-30388405 Setaria italica
Seita.7G243300 1.0kb upstream 1.0kb upstream 4373 true scaffold_7: 30383533-30387905 Setaria italica
Seita.7G243300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30383533-30384532 Setaria italica
Seita.7G243300 1.0kb downstream 1.0kb downstream 4373 true scaffold_7: 30384533-30388905 Setaria italica
Seita.7G243300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30387906-30388905 Setaria italica
Seita.7G243300 2.0kb upstream 2.0kb upstream 5373 true scaffold_7: 30382533-30387905 Setaria italica
Seita.7G243300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30382533-30384532 Setaria italica
Seita.7G243300 2.0kb downstream 2.0kb downstream 5373 true scaffold_7: 30384533-30389905 Setaria italica
Seita.7G243300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30387906-30389905 Setaria italica
Seita.7G243300 5.0kb upstream 5.0kb upstream 8373 true scaffold_7: 30379533-30387905 Setaria italica
Seita.7G243300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30379533-30384532 Setaria italica
Seita.7G243300 5.0kb downstream 5.0kb downstream 8373 true scaffold_7: 30384533-30392905 Setaria italica
Seita.7G243300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30387906-30392905 Setaria italica
Seita.7G243300 10.0kb upstream 10.0kb upstream 13373 true scaffold_7: 30374533-30387905 Setaria italica
Seita.7G243300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30374533-30384532 Setaria italica
Seita.7G243300 10.0kb downstream 10.0kb downstream 13373 true scaffold_7: 30384533-30397905 Setaria italica
Seita.7G243300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30387906-30397905 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176567 5267 Panicoideae View MSA
124572395 5269 Grass View MSA
122045036 5273 Angiosperm View MSA
121345728 5274 Embryophyte View MSA
123424844 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.103     High  
cufflinks 18.517     High  
cufflinks 45.977     High High
cufflinks 53.304     High High
cufflinks 43.211     High  
cufflinks 19.636     High  
cufflinks 29.76     High  
cufflinks 44.857     High  
cufflinks 25.74     High  
cufflinks 20.19     High  
cufflinks 17.701     High  
cufflinks 9.52       Low
cufflinks 21.483     High  
cufflinks 19.772     High  
cufflinks 20.738     High  
cufflinks 18.825     High  
cufflinks 11.677        
cufflinks 1.999       Low
cufflinks 75.246     High High
cufflinks 18.061     High  

0 Strain