Gene : Seita.7G245600 S. italica v2.2
Defline:  (1 of 1) PTHR12854//PTHR12854:SF12 - ATAXIN 2-RELATED Genomic Order:  2456
Name:  ? Seita.7G245600 Secondary Identifier:  ? PAC:32703152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G245600 0.5kb upstream 0.5kb upstream 5556 true scaffold_7: 30504123-30509678 Setaria italica
Seita.7G245600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30504123-30504622 Setaria italica
Seita.7G245600 0.5kb downstream 0.5kb downstream 5556 true scaffold_7: 30504623-30510178 Setaria italica
Seita.7G245600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30509679-30510178 Setaria italica
Seita.7G245600 1.0kb upstream 1.0kb upstream 6056 true scaffold_7: 30503623-30509678 Setaria italica
Seita.7G245600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30503623-30504622 Setaria italica
Seita.7G245600 1.0kb downstream 1.0kb downstream 6056 true scaffold_7: 30504623-30510678 Setaria italica
Seita.7G245600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30509679-30510678 Setaria italica
Seita.7G245600 2.0kb upstream 2.0kb upstream 7056 true scaffold_7: 30502623-30509678 Setaria italica
Seita.7G245600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30502623-30504622 Setaria italica
Seita.7G245600 2.0kb downstream 2.0kb downstream 7056 true scaffold_7: 30504623-30511678 Setaria italica
Seita.7G245600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30509679-30511678 Setaria italica
Seita.7G245600 5.0kb upstream 5.0kb upstream 10056 true scaffold_7: 30499623-30509678 Setaria italica
Seita.7G245600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30499623-30504622 Setaria italica
Seita.7G245600 5.0kb downstream 5.0kb downstream 10056 true scaffold_7: 30504623-30514678 Setaria italica
Seita.7G245600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30509679-30514678 Setaria italica
Seita.7G245600 10.0kb upstream 10.0kb upstream 15056 true scaffold_7: 30494623-30509678 Setaria italica
Seita.7G245600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30494623-30504622 Setaria italica
Seita.7G245600 10.0kb downstream 10.0kb downstream 15056 true scaffold_7: 30504623-30519678 Setaria italica
Seita.7G245600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30509679-30519678 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196830 5267 Panicoideae View MSA
124578069 5269 Grass View MSA
122047595 5273 Angiosperm View MSA
121310768 5274 Embryophyte View MSA
123348174 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.409        
cufflinks 7.395        
cufflinks 4.129       Low
cufflinks 3.952       Low
cufflinks 3.736       Low
cufflinks 7.464        
cufflinks 5.709        
cufflinks 5.67        
cufflinks 4.578        
cufflinks 9.691       High
cufflinks 9.903       High
cufflinks 8.862        
cufflinks 9.413       High
cufflinks 3.526       Low
cufflinks 9.899       High
cufflinks 5.251        
cufflinks 8.77        
cufflinks 7.543        
cufflinks 3.803       Low
cufflinks 8.977        

0 Strain