Gene : Seita.7G248900 S. italica v2.2

Defline:  (1 of 9) 1.3.1.77 - Anthocyanidin reductase / ANR Genomic Order:  2489
Name:  ? Seita.7G248900 Secondary Identifier:  ? PAC:32703298

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6035 Setaria italica pathologic  
Sitalica PWY-641 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G248900 0.5kb upstream 0.5kb upstream 2151 true scaffold_7: 30682647-30684797 Setaria italica
Seita.7G248900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 30682647-30683146 Setaria italica
Seita.7G248900 0.5kb downstream 0.5kb downstream 2151 true scaffold_7: 30683147-30685297 Setaria italica
Seita.7G248900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 30684798-30685297 Setaria italica
Seita.7G248900 1.0kb upstream 1.0kb upstream 2651 true scaffold_7: 30682147-30684797 Setaria italica
Seita.7G248900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 30682147-30683146 Setaria italica
Seita.7G248900 1.0kb downstream 1.0kb downstream 2651 true scaffold_7: 30683147-30685797 Setaria italica
Seita.7G248900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 30684798-30685797 Setaria italica
Seita.7G248900 2.0kb upstream 2.0kb upstream 3651 true scaffold_7: 30681147-30684797 Setaria italica
Seita.7G248900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 30681147-30683146 Setaria italica
Seita.7G248900 2.0kb downstream 2.0kb downstream 3651 true scaffold_7: 30683147-30686797 Setaria italica
Seita.7G248900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 30684798-30686797 Setaria italica
Seita.7G248900 5.0kb upstream 5.0kb upstream 6651 true scaffold_7: 30678147-30684797 Setaria italica
Seita.7G248900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 30678147-30683146 Setaria italica
Seita.7G248900 5.0kb downstream 5.0kb downstream 6651 true scaffold_7: 30683147-30689797 Setaria italica
Seita.7G248900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 30684798-30689797 Setaria italica
Seita.7G248900 10.0kb upstream 10.0kb upstream 11651 true scaffold_7: 30673147-30684797 Setaria italica
Seita.7G248900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 30673147-30683146 Setaria italica
Seita.7G248900 10.0kb downstream 10.0kb downstream 11651 true scaffold_7: 30683147-30694797 Setaria italica
Seita.7G248900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 30684798-30694797 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194772 5267 Panicoideae View MSA
124589961 5269 Grass View MSA
122043153 5273 Angiosperm View MSA
121310082 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.151        
cufflinks 8.874       High
cufflinks 4.25        
cufflinks 2.753        
cufflinks 2.532        
cufflinks 6.695       High
cufflinks 2.897        
cufflinks 2.466        
cufflinks 0.815        
cufflinks 0.598        
cufflinks 0.106     Low Low
cufflinks 0.021     Low Low
cufflinks 0.141     Low  
cufflinks 9.736       High
cufflinks 0.11     Low Low
cufflinks 3.979        
cufflinks 0.092     Low Low
cufflinks 0.541        
cufflinks 8.707       High
cufflinks 0.031     Low Low

0 Strain