Gene : Seita.7G254600 S. italica v2.2
Defline:  (1 of 2) PTHR10139 - DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11A Genomic Order:  2546
Name:  ? Seita.7G254600 Secondary Identifier:  ? PAC:32702684
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G254600 0.5kb upstream 0.5kb upstream 6915 true scaffold_7: 31040311-31047225 Setaria italica
Seita.7G254600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 31040311-31040810 Setaria italica
Seita.7G254600 0.5kb downstream 0.5kb downstream 6915 true scaffold_7: 31040811-31047725 Setaria italica
Seita.7G254600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 31047226-31047725 Setaria italica
Seita.7G254600 1.0kb upstream 1.0kb upstream 7415 true scaffold_7: 31039811-31047225 Setaria italica
Seita.7G254600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 31039811-31040810 Setaria italica
Seita.7G254600 1.0kb downstream 1.0kb downstream 7415 true scaffold_7: 31040811-31048225 Setaria italica
Seita.7G254600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 31047226-31048225 Setaria italica
Seita.7G254600 2.0kb upstream 2.0kb upstream 8415 true scaffold_7: 31038811-31047225 Setaria italica
Seita.7G254600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 31038811-31040810 Setaria italica
Seita.7G254600 2.0kb downstream 2.0kb downstream 8415 true scaffold_7: 31040811-31049225 Setaria italica
Seita.7G254600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 31047226-31049225 Setaria italica
Seita.7G254600 5.0kb upstream 5.0kb upstream 11415 true scaffold_7: 31035811-31047225 Setaria italica
Seita.7G254600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 31035811-31040810 Setaria italica
Seita.7G254600 5.0kb downstream 5.0kb downstream 11415 true scaffold_7: 31040811-31052225 Setaria italica
Seita.7G254600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 31047226-31052225 Setaria italica
Seita.7G254600 10.0kb upstream 10.0kb upstream 16415 true scaffold_7: 31030811-31047225 Setaria italica
Seita.7G254600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 31030811-31040810 Setaria italica
Seita.7G254600 10.0kb downstream 10.0kb downstream 16415 true scaffold_7: 31040811-31057225 Setaria italica
Seita.7G254600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 31047226-31057225 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184566 5267 Panicoideae View MSA
124578296 5269 Grass View MSA
122042843 5273 Angiosperm View MSA
121346679 5274 Embryophyte View MSA
123424970 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.598       High
cufflinks 5.73        
cufflinks 5.721        
cufflinks 4.548        
cufflinks 4.713        
cufflinks 7.256       High
cufflinks 5.168        
cufflinks 4.619        
cufflinks 5.039        
cufflinks 3.776       Low
cufflinks 4.863        
cufflinks 6.718        
cufflinks 6.665        
cufflinks 4.01       Low
cufflinks 5.408        
cufflinks 6.709        
cufflinks 6.814       High
cufflinks 4.514        
cufflinks 3.016       Low
cufflinks 5.99        

0 Strain