Gene : Seita.7G193700 S. italica v2.2
Defline:  (1 of 1) PTHR23002//PTHR23002:SF73 - ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN Genomic Order:  1937
Name:  ? Seita.7G193700 Secondary Identifier:  ? PAC:32705564
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G193700 0.5kb upstream 0.5kb upstream 3878 true scaffold_7: 26785646-26789523 Setaria italica
Seita.7G193700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 26789024-26789523 Setaria italica
Seita.7G193700 0.5kb downstream 0.5kb downstream 3878 true scaffold_7: 26785146-26789023 Setaria italica
Seita.7G193700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 26785146-26785645 Setaria italica
Seita.7G193700 1.0kb upstream 1.0kb upstream 4378 true scaffold_7: 26785646-26790023 Setaria italica
Seita.7G193700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 26789024-26790023 Setaria italica
Seita.7G193700 1.0kb downstream 1.0kb downstream 4378 true scaffold_7: 26784646-26789023 Setaria italica
Seita.7G193700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 26784646-26785645 Setaria italica
Seita.7G193700 2.0kb upstream 2.0kb upstream 5378 true scaffold_7: 26785646-26791023 Setaria italica
Seita.7G193700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 26789024-26791023 Setaria italica
Seita.7G193700 2.0kb downstream 2.0kb downstream 5378 true scaffold_7: 26783646-26789023 Setaria italica
Seita.7G193700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 26783646-26785645 Setaria italica
Seita.7G193700 5.0kb upstream 5.0kb upstream 8378 true scaffold_7: 26785646-26794023 Setaria italica
Seita.7G193700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 26789024-26794023 Setaria italica
Seita.7G193700 5.0kb downstream 5.0kb downstream 8378 true scaffold_7: 26780646-26789023 Setaria italica
Seita.7G193700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 26780646-26785645 Setaria italica
Seita.7G193700 10.0kb upstream 10.0kb upstream 13378 true scaffold_7: 26785646-26799023 Setaria italica
Seita.7G193700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 26789024-26799023 Setaria italica
Seita.7G193700 10.0kb downstream 10.0kb downstream 13378 true scaffold_7: 26775646-26789023 Setaria italica
Seita.7G193700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 26775646-26785645 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196958 5267 Panicoideae View MSA
124575450 5269 Grass View MSA
122042446 5273 Angiosperm View MSA
121345577 5274 Embryophyte View MSA
123425385 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.1        
cufflinks 4.01        
cufflinks 1.279       Low
cufflinks 1.137       Low
cufflinks 1.654       Low
cufflinks 4.623       High
cufflinks 2.129        
cufflinks 3.717        
cufflinks 3.365        
cufflinks 4.06        
cufflinks 3.036        
cufflinks 3.054        
cufflinks 2.669        
cufflinks 2.309        
cufflinks 3.715        
cufflinks 1.968        
cufflinks 4.598       High
cufflinks 2.301        
cufflinks 1.321       Low
cufflinks 3.429        

0 Strain