Gene : Seita.7G193900 S. italica v2.2
Defline:  (1 of 6) PF00122//PF00403//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  1939
Name:  ? Seita.7G193900 Secondary Identifier:  ? PAC:32702729
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G193900 0.5kb upstream 0.5kb upstream 6700 true scaffold_7: 26797783-26804482 Setaria italica
Seita.7G193900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 26797783-26798282 Setaria italica
Seita.7G193900 0.5kb downstream 0.5kb downstream 6700 true scaffold_7: 26798283-26804982 Setaria italica
Seita.7G193900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 26804483-26804982 Setaria italica
Seita.7G193900 1.0kb upstream 1.0kb upstream 7200 true scaffold_7: 26797283-26804482 Setaria italica
Seita.7G193900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 26797283-26798282 Setaria italica
Seita.7G193900 1.0kb downstream 1.0kb downstream 7200 true scaffold_7: 26798283-26805482 Setaria italica
Seita.7G193900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 26804483-26805482 Setaria italica
Seita.7G193900 2.0kb upstream 2.0kb upstream 8200 true scaffold_7: 26796283-26804482 Setaria italica
Seita.7G193900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 26796283-26798282 Setaria italica
Seita.7G193900 2.0kb downstream 2.0kb downstream 8200 true scaffold_7: 26798283-26806482 Setaria italica
Seita.7G193900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 26804483-26806482 Setaria italica
Seita.7G193900 5.0kb upstream 5.0kb upstream 11200 true scaffold_7: 26793283-26804482 Setaria italica
Seita.7G193900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 26793283-26798282 Setaria italica
Seita.7G193900 5.0kb downstream 5.0kb downstream 11200 true scaffold_7: 26798283-26809482 Setaria italica
Seita.7G193900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 26804483-26809482 Setaria italica
Seita.7G193900 10.0kb upstream 10.0kb upstream 16200 true scaffold_7: 26788283-26804482 Setaria italica
Seita.7G193900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 26788283-26798282 Setaria italica
Seita.7G193900 10.0kb downstream 10.0kb downstream 16200 true scaffold_7: 26798283-26814482 Setaria italica
Seita.7G193900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 26804483-26814482 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176426 5267 Panicoideae View MSA
124570086 5269 Grass View MSA
122042760 5273 Angiosperm View MSA
121351146 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.567       Low
cufflinks 0.719        
cufflinks 3.279        
cufflinks 1.412        
cufflinks 1.11        
cufflinks 0.734        
cufflinks 3.526        
cufflinks 0.885        
cufflinks 0.604       Low
cufflinks 1.064        
cufflinks 0.425       Low
cufflinks 5.223       High
cufflinks 1.78        
cufflinks 2.876        
cufflinks 4.21       High
cufflinks 1.421        
cufflinks 11.135       High
cufflinks 0.776        
cufflinks 3.002        
cufflinks 1.292        

0 Strain