Gene : Seita.7G194100 S. italica v2.2
Defline:  (1 of 3) 1.11.1.12//1.11.1.9 - Phospholipid-hydroperoxide glutathione peroxidase / Peroxidation-inhibiting protein Genomic Order:  1941
Name:  ? Seita.7G194100 Secondary Identifier:  ? PAC:32704727
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY-1 Setaria italica pathologic  
Sitalica PWY-4081 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G194100 0.5kb upstream 0.5kb upstream 6006 true scaffold_7: 26813946-26819951 Setaria italica
Seita.7G194100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 26813946-26814445 Setaria italica
Seita.7G194100 0.5kb downstream 0.5kb downstream 6006 true scaffold_7: 26814446-26820451 Setaria italica
Seita.7G194100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 26819952-26820451 Setaria italica
Seita.7G194100 1.0kb upstream 1.0kb upstream 6506 true scaffold_7: 26813446-26819951 Setaria italica
Seita.7G194100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 26813446-26814445 Setaria italica
Seita.7G194100 1.0kb downstream 1.0kb downstream 6506 true scaffold_7: 26814446-26820951 Setaria italica
Seita.7G194100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 26819952-26820951 Setaria italica
Seita.7G194100 2.0kb upstream 2.0kb upstream 7506 true scaffold_7: 26812446-26819951 Setaria italica
Seita.7G194100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 26812446-26814445 Setaria italica
Seita.7G194100 2.0kb downstream 2.0kb downstream 7506 true scaffold_7: 26814446-26821951 Setaria italica
Seita.7G194100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 26819952-26821951 Setaria italica
Seita.7G194100 5.0kb upstream 5.0kb upstream 10506 true scaffold_7: 26809446-26819951 Setaria italica
Seita.7G194100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 26809446-26814445 Setaria italica
Seita.7G194100 5.0kb downstream 5.0kb downstream 10506 true scaffold_7: 26814446-26824951 Setaria italica
Seita.7G194100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 26819952-26824951 Setaria italica
Seita.7G194100 10.0kb upstream 10.0kb upstream 15506 true scaffold_7: 26804446-26819951 Setaria italica
Seita.7G194100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 26804446-26814445 Setaria italica
Seita.7G194100 10.0kb downstream 10.0kb downstream 15506 true scaffold_7: 26814446-26829951 Setaria italica
Seita.7G194100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 26819952-26829951 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195161 5267 Panicoideae View MSA
124583116 5269 Grass View MSA
122049273 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.947     High  
cufflinks 17.144     High Low
cufflinks 26.05     High  
cufflinks 28.749     High  
cufflinks 30.563     High  
cufflinks 15.47     High Low
cufflinks 21.29     High  
cufflinks 40.431     High  
cufflinks 30.139     High  
cufflinks 68.973     High High
cufflinks 38.834     High  
cufflinks 26.64     High  
cufflinks 38.775     High  
cufflinks 49.45     High High
cufflinks 22.424     High  
cufflinks 12.022     High Low
cufflinks 22.6     High  
cufflinks 35.524     High  
cufflinks 54.651     High High
cufflinks 24.222     High  

0 Strain