Gene : Seita.7G195100 S. italica v2.2
Defline:  (1 of 1) PTHR22691:SF8 - PROTEIN SPT2 HOMOLOG Genomic Order:  1951
Name:  ? Seita.7G195100 Secondary Identifier:  ? PAC:32702690
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G195100 0.5kb upstream 0.5kb upstream 4042 true scaffold_7: 26873509-26877550 Setaria italica
Seita.7G195100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 26877051-26877550 Setaria italica
Seita.7G195100 0.5kb downstream 0.5kb downstream 4042 true scaffold_7: 26873009-26877050 Setaria italica
Seita.7G195100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 26873009-26873508 Setaria italica
Seita.7G195100 1.0kb upstream 1.0kb upstream 4542 true scaffold_7: 26873509-26878050 Setaria italica
Seita.7G195100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 26877051-26878050 Setaria italica
Seita.7G195100 1.0kb downstream 1.0kb downstream 4542 true scaffold_7: 26872509-26877050 Setaria italica
Seita.7G195100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 26872509-26873508 Setaria italica
Seita.7G195100 2.0kb upstream 2.0kb upstream 5542 true scaffold_7: 26873509-26879050 Setaria italica
Seita.7G195100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 26877051-26879050 Setaria italica
Seita.7G195100 2.0kb downstream 2.0kb downstream 5542 true scaffold_7: 26871509-26877050 Setaria italica
Seita.7G195100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 26871509-26873508 Setaria italica
Seita.7G195100 5.0kb upstream 5.0kb upstream 8542 true scaffold_7: 26873509-26882050 Setaria italica
Seita.7G195100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 26877051-26882050 Setaria italica
Seita.7G195100 5.0kb downstream 5.0kb downstream 8542 true scaffold_7: 26868509-26877050 Setaria italica
Seita.7G195100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 26868509-26873508 Setaria italica
Seita.7G195100 10.0kb upstream 10.0kb upstream 13542 true scaffold_7: 26873509-26887050 Setaria italica
Seita.7G195100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 26877051-26887050 Setaria italica
Seita.7G195100 10.0kb downstream 10.0kb downstream 13542 true scaffold_7: 26863509-26877050 Setaria italica
Seita.7G195100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 26863509-26873508 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178951 5267 Panicoideae View MSA
124577543 5269 Grass View MSA
122048073 5273 Angiosperm View MSA
121347399 5274 Embryophyte View MSA
123427511 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.871     High  
cufflinks 26.43     High  
cufflinks 18.347     High  
cufflinks 17.981     High  
cufflinks 15.685     High Low
cufflinks 27.296     High  
cufflinks 24.411     High  
cufflinks 17.787     High  
cufflinks 19.002     High  
cufflinks 13.022       Low
cufflinks 23.762     High  
cufflinks 29.849     High  
cufflinks 21.07     High  
cufflinks 18.495     High  
cufflinks 25.122     High  
cufflinks 30.965     High High
cufflinks 22.811     High  
cufflinks 52.666     High High
cufflinks 17.793     High  
cufflinks 23.695     High  

0 Strain