Gene : Seita.7G193400 S. italica v2.2
Defline:  (1 of 2) PTHR13904 - PRE-MRNA SPLICING FACTOR PRP31 Genomic Order:  1934
Name:  ? Seita.7G193400 Secondary Identifier:  ? PAC:32705048
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G193400 0.5kb upstream 0.5kb upstream 3788 true scaffold_7: 26755549-26759336 Setaria italica
Seita.7G193400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 26755549-26756048 Setaria italica
Seita.7G193400 0.5kb downstream 0.5kb downstream 3788 true scaffold_7: 26756049-26759836 Setaria italica
Seita.7G193400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 26759337-26759836 Setaria italica
Seita.7G193400 1.0kb upstream 1.0kb upstream 4288 true scaffold_7: 26755049-26759336 Setaria italica
Seita.7G193400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 26755049-26756048 Setaria italica
Seita.7G193400 1.0kb downstream 1.0kb downstream 4288 true scaffold_7: 26756049-26760336 Setaria italica
Seita.7G193400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 26759337-26760336 Setaria italica
Seita.7G193400 2.0kb upstream 2.0kb upstream 5288 true scaffold_7: 26754049-26759336 Setaria italica
Seita.7G193400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 26754049-26756048 Setaria italica
Seita.7G193400 2.0kb downstream 2.0kb downstream 5288 true scaffold_7: 26756049-26761336 Setaria italica
Seita.7G193400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 26759337-26761336 Setaria italica
Seita.7G193400 5.0kb upstream 5.0kb upstream 8288 true scaffold_7: 26751049-26759336 Setaria italica
Seita.7G193400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 26751049-26756048 Setaria italica
Seita.7G193400 5.0kb downstream 5.0kb downstream 8288 true scaffold_7: 26756049-26764336 Setaria italica
Seita.7G193400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 26759337-26764336 Setaria italica
Seita.7G193400 10.0kb upstream 10.0kb upstream 13288 true scaffold_7: 26746049-26759336 Setaria italica
Seita.7G193400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 26746049-26756048 Setaria italica
Seita.7G193400 10.0kb downstream 10.0kb downstream 13288 true scaffold_7: 26756049-26769336 Setaria italica
Seita.7G193400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 26759337-26769336 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177206 5267 Panicoideae View MSA
124574565 5269 Grass View MSA
122045972 5273 Angiosperm View MSA
123428992 5275 Viridiplantae View MSA
121345979 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.417     High  
cufflinks 11.824        
cufflinks 13.172     High  
cufflinks 11.978     High  
cufflinks 8.515       Low
cufflinks 13.674     High  
cufflinks 11.215        
cufflinks 13.833     High  
cufflinks 8.012       Low
cufflinks 6.789       Low
cufflinks 10.359        
cufflinks 12.628        
cufflinks 10.28        
cufflinks 8.29       Low
cufflinks 8.903        
cufflinks 16.456     High High
cufflinks 12.133        
cufflinks 26.328     High High
cufflinks 11.321     High  
cufflinks 10.185        

0 Strain