Gene : Seita.7G197500 S. italica v2.2
Defline:  (1 of 1) PTHR10030:SF27 - ALPHA-L-FUCOSIDASE 1 Genomic Order:  1975
Name:  ? Seita.7G197500 Secondary Identifier:  ? PAC:32703817
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G197500 0.5kb upstream 0.5kb upstream 3738 true scaffold_7: 27030949-27034686 Setaria italica
Seita.7G197500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 27034187-27034686 Setaria italica
Seita.7G197500 0.5kb downstream 0.5kb downstream 3738 true scaffold_7: 27030449-27034186 Setaria italica
Seita.7G197500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 27030449-27030948 Setaria italica
Seita.7G197500 1.0kb upstream 1.0kb upstream 4238 true scaffold_7: 27030949-27035186 Setaria italica
Seita.7G197500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 27034187-27035186 Setaria italica
Seita.7G197500 1.0kb downstream 1.0kb downstream 4238 true scaffold_7: 27029949-27034186 Setaria italica
Seita.7G197500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 27029949-27030948 Setaria italica
Seita.7G197500 2.0kb upstream 2.0kb upstream 5238 true scaffold_7: 27030949-27036186 Setaria italica
Seita.7G197500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 27034187-27036186 Setaria italica
Seita.7G197500 2.0kb downstream 2.0kb downstream 5238 true scaffold_7: 27028949-27034186 Setaria italica
Seita.7G197500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 27028949-27030948 Setaria italica
Seita.7G197500 5.0kb upstream 5.0kb upstream 8238 true scaffold_7: 27030949-27039186 Setaria italica
Seita.7G197500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 27034187-27039186 Setaria italica
Seita.7G197500 5.0kb downstream 5.0kb downstream 8238 true scaffold_7: 27025949-27034186 Setaria italica
Seita.7G197500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 27025949-27030948 Setaria italica
Seita.7G197500 10.0kb upstream 10.0kb upstream 13238 true scaffold_7: 27030949-27044186 Setaria italica
Seita.7G197500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 27034187-27044186 Setaria italica
Seita.7G197500 10.0kb downstream 10.0kb downstream 13238 true scaffold_7: 27020949-27034186 Setaria italica
Seita.7G197500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 27020949-27030948 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195152 5267 Panicoideae View MSA
124571880 5269 Grass View MSA
122047264 5273 Angiosperm View MSA
121351387 5274 Embryophyte View MSA
123382147 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.36        
cufflinks 8.936        
cufflinks 4.907        
cufflinks 4.76        
cufflinks 5.162        
cufflinks 8.184        
cufflinks 8.328        
cufflinks 3.959       Low
cufflinks 4.735        
cufflinks 10.114        
cufflinks 10.206        
cufflinks 9.495        
cufflinks 13.024       High
cufflinks 5.884        
cufflinks 10.399        
cufflinks 3.758       Low
cufflinks 9.969        
cufflinks 4.262       Low
cufflinks 4.337       Low
cufflinks 12.382       High

0 Strain