Gene : Seita.7G198000 S. italica v2.2
Defline:  (1 of 6) PF00924 - Mechanosensitive ion channel (MS_channel) Genomic Order:  1980
Name:  ? Seita.7G198000 Secondary Identifier:  ? PAC:32704912
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G198000 0.5kb upstream 0.5kb upstream 3978 true scaffold_7: 27069038-27073015 Setaria italica
Seita.7G198000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 27072516-27073015 Setaria italica
Seita.7G198000 0.5kb downstream 0.5kb downstream 3978 true scaffold_7: 27068538-27072515 Setaria italica
Seita.7G198000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 27068538-27069037 Setaria italica
Seita.7G198000 1.0kb upstream 1.0kb upstream 4478 true scaffold_7: 27069038-27073515 Setaria italica
Seita.7G198000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 27072516-27073515 Setaria italica
Seita.7G198000 1.0kb downstream 1.0kb downstream 4478 true scaffold_7: 27068038-27072515 Setaria italica
Seita.7G198000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 27068038-27069037 Setaria italica
Seita.7G198000 2.0kb upstream 2.0kb upstream 5478 true scaffold_7: 27069038-27074515 Setaria italica
Seita.7G198000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 27072516-27074515 Setaria italica
Seita.7G198000 2.0kb downstream 2.0kb downstream 5478 true scaffold_7: 27067038-27072515 Setaria italica
Seita.7G198000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 27067038-27069037 Setaria italica
Seita.7G198000 5.0kb upstream 5.0kb upstream 8478 true scaffold_7: 27069038-27077515 Setaria italica
Seita.7G198000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 27072516-27077515 Setaria italica
Seita.7G198000 5.0kb downstream 5.0kb downstream 8478 true scaffold_7: 27064038-27072515 Setaria italica
Seita.7G198000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 27064038-27069037 Setaria italica
Seita.7G198000 10.0kb upstream 10.0kb upstream 13478 true scaffold_7: 27069038-27082515 Setaria italica
Seita.7G198000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 27072516-27082515 Setaria italica
Seita.7G198000 10.0kb downstream 10.0kb downstream 13478 true scaffold_7: 27059038-27072515 Setaria italica
Seita.7G198000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 27059038-27069037 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185977 5267 Panicoideae View MSA
124572484 5269 Grass View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.021     Low Low
cufflinks 0.117     Low  
cufflinks 0.104        
cufflinks 0.189        
cufflinks 0.173        
cufflinks 0.203        
cufflinks 0.215        
cufflinks 0.055     Low  
cufflinks 0.111        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.038     Low  
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.212        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.297       High
cufflinks 0.005     Low Low
cufflinks 0.098        
cufflinks 0.164        
cufflinks 0.015     Low Low

0 Strain