Gene : Seita.7G201100 S. italica v2.2
Defline:  (1 of 3) PTHR22891//PTHR22891:SF34 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C Genomic Order:  2011
Name:  ? Seita.7G201100 Secondary Identifier:  ? PAC:32703790
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G201100 0.5kb upstream 0.5kb upstream 14363 true scaffold_7: 27330567-27344929 Setaria italica
Seita.7G201100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 27344430-27344929 Setaria italica
Seita.7G201100 0.5kb downstream 0.5kb downstream 14363 true scaffold_7: 27330067-27344429 Setaria italica
Seita.7G201100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 27330067-27330566 Setaria italica
Seita.7G201100 1.0kb upstream 1.0kb upstream 14863 true scaffold_7: 27330567-27345429 Setaria italica
Seita.7G201100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 27344430-27345429 Setaria italica
Seita.7G201100 1.0kb downstream 1.0kb downstream 14863 true scaffold_7: 27329567-27344429 Setaria italica
Seita.7G201100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 27329567-27330566 Setaria italica
Seita.7G201100 2.0kb upstream 2.0kb upstream 15863 true scaffold_7: 27330567-27346429 Setaria italica
Seita.7G201100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 27344430-27346429 Setaria italica
Seita.7G201100 2.0kb downstream 2.0kb downstream 15863 true scaffold_7: 27328567-27344429 Setaria italica
Seita.7G201100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 27328567-27330566 Setaria italica
Seita.7G201100 5.0kb upstream 5.0kb upstream 18863 true scaffold_7: 27330567-27349429 Setaria italica
Seita.7G201100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 27344430-27349429 Setaria italica
Seita.7G201100 5.0kb downstream 5.0kb downstream 18863 true scaffold_7: 27325567-27344429 Setaria italica
Seita.7G201100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 27325567-27330566 Setaria italica
Seita.7G201100 10.0kb upstream 10.0kb upstream 23863 true scaffold_7: 27330567-27354429 Setaria italica
Seita.7G201100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 27344430-27354429 Setaria italica
Seita.7G201100 10.0kb downstream 10.0kb downstream 23863 true scaffold_7: 27320567-27344429 Setaria italica
Seita.7G201100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 27320567-27330566 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182534 5267 Panicoideae View MSA
124573264 5269 Grass View MSA
122045279 5273 Angiosperm View MSA
121345149 5274 Embryophyte View MSA
123428465 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.95     High  
cufflinks 33.421     High  
cufflinks 32.623     High  
cufflinks 29.848     High  
cufflinks 30.936     High  
cufflinks 42.472     High High
cufflinks 27.75     High  
cufflinks 23.892     High  
cufflinks 27.824     High  
cufflinks 11.099       Low
cufflinks 17.073     High  
cufflinks 24.387     High  
cufflinks 25.491     High  
cufflinks 12.709       Low
cufflinks 16.917     High  
cufflinks 12.971     High Low
cufflinks 25.896     High  
cufflinks 6.797       Low
cufflinks 20.23     High  
cufflinks 30.141     High  

0 Strain