Gene : Seita.7G203800 S. italica v2.2
Defline:  (1 of 1) PTHR10108:SF763 - METHYLTRANSFERASE PMT13-RELATED Genomic Order:  2038
Name:  ? Seita.7G203800 Secondary Identifier:  ? PAC:32703814
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2541 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G203800 0.5kb upstream 0.5kb upstream 5023 true scaffold_7: 27581629-27586651 Setaria italica
Seita.7G203800 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 27586152-27586651 Setaria italica
Seita.7G203800 0.5kb downstream 0.5kb downstream 5023 true scaffold_7: 27581129-27586151 Setaria italica
Seita.7G203800 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 27581129-27581628 Setaria italica
Seita.7G203800 1.0kb upstream 1.0kb upstream 5523 true scaffold_7: 27581629-27587151 Setaria italica
Seita.7G203800 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 27586152-27587151 Setaria italica
Seita.7G203800 1.0kb downstream 1.0kb downstream 5523 true scaffold_7: 27580629-27586151 Setaria italica
Seita.7G203800 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 27580629-27581628 Setaria italica
Seita.7G203800 2.0kb upstream 2.0kb upstream 6523 true scaffold_7: 27581629-27588151 Setaria italica
Seita.7G203800 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 27586152-27588151 Setaria italica
Seita.7G203800 2.0kb downstream 2.0kb downstream 6523 true scaffold_7: 27579629-27586151 Setaria italica
Seita.7G203800 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 27579629-27581628 Setaria italica
Seita.7G203800 5.0kb upstream 5.0kb upstream 9523 true scaffold_7: 27581629-27591151 Setaria italica
Seita.7G203800 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 27586152-27591151 Setaria italica
Seita.7G203800 5.0kb downstream 5.0kb downstream 9523 true scaffold_7: 27576629-27586151 Setaria italica
Seita.7G203800 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 27576629-27581628 Setaria italica
Seita.7G203800 10.0kb upstream 10.0kb upstream 14523 true scaffold_7: 27581629-27596151 Setaria italica
Seita.7G203800 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 27586152-27596151 Setaria italica
Seita.7G203800 10.0kb downstream 10.0kb downstream 14523 true scaffold_7: 27571629-27586151 Setaria italica
Seita.7G203800 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 27571629-27581628 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189511 5267 Panicoideae View MSA
124580094 5269 Grass View MSA
122045740 5273 Angiosperm View MSA
121347319 5274 Embryophyte View MSA
123380527 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.052       High
cufflinks 2.299       High
cufflinks 0.572       Low
cufflinks 0.465       Low
cufflinks 0.437       Low
cufflinks 2.086       High
cufflinks 1.607        
cufflinks 0.876        
cufflinks 0.878        
cufflinks 2.108       High
cufflinks 1.691        
cufflinks 1.068        
cufflinks 0.68        
cufflinks 0.42       Low
cufflinks 1.461        
cufflinks 1.346        
cufflinks 0.938        
cufflinks 1.768        
cufflinks 0.382       Low
cufflinks 1.18        

0 Strain