Gene : Seita.7G207700 S. italica v2.2
Defline:  (1 of 21) PF00560//PF07714//PF08263//PF13855 - Leucine Rich Repeat (LRR_1) // Protein tyrosine kinase (Pkinase_Tyr) // Leucine rich repeat N-terminal domain (LRRNT_2) // Leucine rich repeat (LRR_8) Genomic Order:  2077
Name:  ? Seita.7G207700 Secondary Identifier:  ? PAC:32702619
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G207700 0.5kb upstream 0.5kb upstream 4412 true scaffold_7: 27912042-27916453 Setaria italica
Seita.7G207700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 27912042-27912541 Setaria italica
Seita.7G207700 0.5kb downstream 0.5kb downstream 4412 true scaffold_7: 27912542-27916953 Setaria italica
Seita.7G207700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 27916454-27916953 Setaria italica
Seita.7G207700 1.0kb upstream 1.0kb upstream 4912 true scaffold_7: 27911542-27916453 Setaria italica
Seita.7G207700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 27911542-27912541 Setaria italica
Seita.7G207700 1.0kb downstream 1.0kb downstream 4912 true scaffold_7: 27912542-27917453 Setaria italica
Seita.7G207700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 27916454-27917453 Setaria italica
Seita.7G207700 2.0kb upstream 2.0kb upstream 5912 true scaffold_7: 27910542-27916453 Setaria italica
Seita.7G207700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 27910542-27912541 Setaria italica
Seita.7G207700 2.0kb downstream 2.0kb downstream 5912 true scaffold_7: 27912542-27918453 Setaria italica
Seita.7G207700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 27916454-27918453 Setaria italica
Seita.7G207700 5.0kb upstream 5.0kb upstream 8912 true scaffold_7: 27907542-27916453 Setaria italica
Seita.7G207700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 27907542-27912541 Setaria italica
Seita.7G207700 5.0kb downstream 5.0kb downstream 8912 true scaffold_7: 27912542-27921453 Setaria italica
Seita.7G207700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 27916454-27921453 Setaria italica
Seita.7G207700 10.0kb upstream 10.0kb upstream 13912 true scaffold_7: 27902542-27916453 Setaria italica
Seita.7G207700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 27902542-27912541 Setaria italica
Seita.7G207700 10.0kb downstream 10.0kb downstream 13912 true scaffold_7: 27912542-27926453 Setaria italica
Seita.7G207700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 27916454-27926453 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179450 5267 Panicoideae View MSA
124585992 5269 Grass View MSA
122043000 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121350177 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.402        
cufflinks 24.554     High High
cufflinks 0.021     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.062     Low Low
cufflinks 30.595     High High
cufflinks 8.365        
cufflinks 6.009        
cufflinks 4.976        
cufflinks 4.415        
cufflinks 11.997        
cufflinks 3.049        
cufflinks 3.712        
cufflinks 0.006     Low Low
cufflinks 10.019        
cufflinks 1.689        
cufflinks 5.879        
cufflinks 0.54        
cufflinks 0.024     Low Low
cufflinks 7.821        

0 Strain