Gene : Seita.7G219600 S. italica v2.2
Defline:  (1 of 1) PTHR19854:SF15 - TRANSDUCIN BETA-LIKE PROTEIN 3 Genomic Order:  2196
Name:  ? Seita.7G219600 Secondary Identifier:  ? PAC:32702374
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G219600 0.5kb upstream 0.5kb upstream 6334 true scaffold_7: 28711166-28717499 Setaria italica
Seita.7G219600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 28717000-28717499 Setaria italica
Seita.7G219600 0.5kb downstream 0.5kb downstream 6334 true scaffold_7: 28710666-28716999 Setaria italica
Seita.7G219600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 28710666-28711165 Setaria italica
Seita.7G219600 1.0kb upstream 1.0kb upstream 6834 true scaffold_7: 28711166-28717999 Setaria italica
Seita.7G219600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 28717000-28717999 Setaria italica
Seita.7G219600 1.0kb downstream 1.0kb downstream 6834 true scaffold_7: 28710166-28716999 Setaria italica
Seita.7G219600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 28710166-28711165 Setaria italica
Seita.7G219600 2.0kb upstream 2.0kb upstream 7834 true scaffold_7: 28711166-28718999 Setaria italica
Seita.7G219600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 28717000-28718999 Setaria italica
Seita.7G219600 2.0kb downstream 2.0kb downstream 7834 true scaffold_7: 28709166-28716999 Setaria italica
Seita.7G219600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 28709166-28711165 Setaria italica
Seita.7G219600 5.0kb upstream 5.0kb upstream 10834 true scaffold_7: 28711166-28721999 Setaria italica
Seita.7G219600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 28717000-28721999 Setaria italica
Seita.7G219600 5.0kb downstream 5.0kb downstream 10834 true scaffold_7: 28706166-28716999 Setaria italica
Seita.7G219600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 28706166-28711165 Setaria italica
Seita.7G219600 10.0kb upstream 10.0kb upstream 15834 true scaffold_7: 28711166-28726999 Setaria italica
Seita.7G219600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 28717000-28726999 Setaria italica
Seita.7G219600 10.0kb downstream 10.0kb downstream 15834 true scaffold_7: 28701166-28716999 Setaria italica
Seita.7G219600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 28701166-28711165 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041178 5273 Angiosperm View MSA
122195092 5267 Panicoideae View MSA
124578593 5269 Grass View MSA
121349403 5274 Embryophyte View MSA
123428044 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.922        
cufflinks 6.432        
cufflinks 4.273        
cufflinks 2.093       Low
cufflinks 3.122       Low
cufflinks 7.104        
cufflinks 4.169        
cufflinks 3.703        
cufflinks 5.862        
cufflinks 3.475        
cufflinks 7.187        
cufflinks 7.582        
cufflinks 4.915        
cufflinks 5.957        
cufflinks 9.573       High
cufflinks 4.014        
cufflinks 8.749       High
cufflinks 5.523        
cufflinks 2.274       Low
cufflinks 8.373       High

0 Strain