Gene : Seita.7G219400 S. italica v2.2
Defline:  (1 of 2) 4.1.1.32 - Phosphoenolpyruvate carboxykinase (GTP) / Phosphopyruvate carboxylase Genomic Order:  2194
Name:  ? Seita.7G219400 Secondary Identifier:  ? PAC:32705389
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLUCONEO-PWY Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G219400 0.5kb upstream 0.5kb upstream 6255 true scaffold_7: 28697560-28703814 Setaria italica
Seita.7G219400 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 28703315-28703814 Setaria italica
Seita.7G219400 0.5kb downstream 0.5kb downstream 6255 true scaffold_7: 28697060-28703314 Setaria italica
Seita.7G219400 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 28697060-28697559 Setaria italica
Seita.7G219400 1.0kb upstream 1.0kb upstream 6755 true scaffold_7: 28697560-28704314 Setaria italica
Seita.7G219400 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 28703315-28704314 Setaria italica
Seita.7G219400 1.0kb downstream 1.0kb downstream 6755 true scaffold_7: 28696560-28703314 Setaria italica
Seita.7G219400 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 28696560-28697559 Setaria italica
Seita.7G219400 2.0kb upstream 2.0kb upstream 7755 true scaffold_7: 28697560-28705314 Setaria italica
Seita.7G219400 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 28703315-28705314 Setaria italica
Seita.7G219400 2.0kb downstream 2.0kb downstream 7755 true scaffold_7: 28695560-28703314 Setaria italica
Seita.7G219400 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 28695560-28697559 Setaria italica
Seita.7G219400 5.0kb upstream 5.0kb upstream 10755 true scaffold_7: 28697560-28708314 Setaria italica
Seita.7G219400 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 28703315-28708314 Setaria italica
Seita.7G219400 5.0kb downstream 5.0kb downstream 10755 true scaffold_7: 28692560-28703314 Setaria italica
Seita.7G219400 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 28692560-28697559 Setaria italica
Seita.7G219400 10.0kb upstream 10.0kb upstream 15755 true scaffold_7: 28697560-28713314 Setaria italica
Seita.7G219400 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 28703315-28713314 Setaria italica
Seita.7G219400 10.0kb downstream 10.0kb downstream 15755 true scaffold_7: 28687560-28703314 Setaria italica
Seita.7G219400 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 28687560-28697559 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185578 5267 Panicoideae View MSA
124569372 5269 Grass View MSA
122049191 5273 Angiosperm View MSA
121348901 5274 Embryophyte View MSA
123381068 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.31        
cufflinks 1.284        
cufflinks 0.619       Low
cufflinks 0.518       Low
cufflinks 0.659       Low
cufflinks 1.232        
cufflinks 1.071        
cufflinks 1.252        
cufflinks 0.971        
cufflinks 1.078        
cufflinks 1.024        
cufflinks 0.79        
cufflinks 0.971        
cufflinks 0.789        
cufflinks 0.976        
cufflinks 1.39       High
cufflinks 1.092        
cufflinks 1.153        
cufflinks 0.369       Low
cufflinks 1.05        

0 Strain