Gene : Seita.7G306700 S. italica v2.2
Defline:  (1 of 2) PTHR23308//PTHR23308:SF29 - NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 Genomic Order:  3067
Name:  ? Seita.7G306700 Secondary Identifier:  ? PAC:32705992
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G306700 0.5kb upstream 0.5kb upstream 2382 true scaffold_7: 34455995-34458376 Setaria italica
Seita.7G306700 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34455995-34456494 Setaria italica
Seita.7G306700 0.5kb downstream 0.5kb downstream 2382 true scaffold_7: 34456495-34458876 Setaria italica
Seita.7G306700 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34458377-34458876 Setaria italica
Seita.7G306700 1.0kb upstream 1.0kb upstream 2882 true scaffold_7: 34455495-34458376 Setaria italica
Seita.7G306700 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34455495-34456494 Setaria italica
Seita.7G306700 1.0kb downstream 1.0kb downstream 2882 true scaffold_7: 34456495-34459376 Setaria italica
Seita.7G306700 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34458377-34459376 Setaria italica
Seita.7G306700 2.0kb upstream 2.0kb upstream 3882 true scaffold_7: 34454495-34458376 Setaria italica
Seita.7G306700 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34454495-34456494 Setaria italica
Seita.7G306700 2.0kb downstream 2.0kb downstream 3882 true scaffold_7: 34456495-34460376 Setaria italica
Seita.7G306700 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34458377-34460376 Setaria italica
Seita.7G306700 5.0kb upstream 5.0kb upstream 6882 true scaffold_7: 34451495-34458376 Setaria italica
Seita.7G306700 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34451495-34456494 Setaria italica
Seita.7G306700 5.0kb downstream 5.0kb downstream 6882 true scaffold_7: 34456495-34463376 Setaria italica
Seita.7G306700 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34458377-34463376 Setaria italica
Seita.7G306700 10.0kb upstream 10.0kb upstream 11882 true scaffold_7: 34446495-34458376 Setaria italica
Seita.7G306700 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34446495-34456494 Setaria italica
Seita.7G306700 10.0kb downstream 10.0kb downstream 11882 true scaffold_7: 34456495-34468376 Setaria italica
Seita.7G306700 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34458377-34468376 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198411 5267 Panicoideae View MSA
124583819 5269 Grass View MSA
122042553 5273 Angiosperm View MSA
121344574 5274 Embryophyte View MSA
123426095 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.355        
cufflinks 13.703     High  
cufflinks 6.263        
cufflinks 8.06        
cufflinks 15.923     High  
cufflinks 9.634        
cufflinks 22.289     High High
cufflinks 23.541     High High
cufflinks 19.501     High  
cufflinks 4.204        
cufflinks 3.333        
cufflinks 1.647       Low
cufflinks 1.28       Low
cufflinks 11.36        
cufflinks 1.031       Low
cufflinks 20.215     High High
cufflinks 1.284       Low
cufflinks 5.008        
cufflinks 33.375     High High
cufflinks 1.25       Low

0 Strain