Gene : Seita.7G307900 S. italica v2.2
Defline:  (1 of 2) PTHR21499:SF33 - HOMOSERINE DEHYDROGENASE Genomic Order:  3079
Name:  ? Seita.7G307900 Secondary Identifier:  ? PAC:32702414
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica HOMOSERSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  
Sitalica THRESYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G307900 0.5kb upstream 0.5kb upstream 4744 true scaffold_7: 34533387-34538130 Setaria italica
Seita.7G307900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34537631-34538130 Setaria italica
Seita.7G307900 0.5kb downstream 0.5kb downstream 4744 true scaffold_7: 34532887-34537630 Setaria italica
Seita.7G307900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34532887-34533386 Setaria italica
Seita.7G307900 1.0kb upstream 1.0kb upstream 5244 true scaffold_7: 34533387-34538630 Setaria italica
Seita.7G307900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34537631-34538630 Setaria italica
Seita.7G307900 1.0kb downstream 1.0kb downstream 5244 true scaffold_7: 34532387-34537630 Setaria italica
Seita.7G307900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34532387-34533386 Setaria italica
Seita.7G307900 2.0kb upstream 2.0kb upstream 6244 true scaffold_7: 34533387-34539630 Setaria italica
Seita.7G307900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34537631-34539630 Setaria italica
Seita.7G307900 2.0kb downstream 2.0kb downstream 6244 true scaffold_7: 34531387-34537630 Setaria italica
Seita.7G307900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34531387-34533386 Setaria italica
Seita.7G307900 5.0kb upstream 5.0kb upstream 9244 true scaffold_7: 34533387-34542630 Setaria italica
Seita.7G307900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34537631-34542630 Setaria italica
Seita.7G307900 5.0kb downstream 5.0kb downstream 9244 true scaffold_7: 34528387-34537630 Setaria italica
Seita.7G307900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34528387-34533386 Setaria italica
Seita.7G307900 10.0kb upstream 10.0kb upstream 14244 true scaffold_7: 34533387-34547630 Setaria italica
Seita.7G307900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34537631-34547630 Setaria italica
Seita.7G307900 10.0kb downstream 10.0kb downstream 14244 true scaffold_7: 34523387-34537630 Setaria italica
Seita.7G307900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34523387-34533386 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188388 5267 Panicoideae View MSA
124571730 5269 Grass View MSA
122043747 5273 Angiosperm View MSA
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.186        
cufflinks 1.62        
cufflinks 1.165        
cufflinks 1.43        
cufflinks 1.334        
cufflinks 1.741       High
cufflinks 1.776       High
cufflinks 2.334       High
cufflinks 1.477        
cufflinks 0.89       Low
cufflinks 1.371        
cufflinks 0.749       Low
cufflinks 1.125        
cufflinks 1.103        
cufflinks 0.968        
cufflinks 2.155       High
cufflinks 1.136        
cufflinks 0.921       Low
cufflinks 1.152        
cufflinks 1.064        

0 Strain