Gene : Seita.7G309300 S. italica v2.2
Defline:  (1 of 1) KOG2896 - UV radiation resistance associated protein Genomic Order:  3093
Name:  ? Seita.7G309300 Secondary Identifier:  ? PAC:32704392
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G309300 0.5kb upstream 0.5kb upstream 5088 true scaffold_7: 34601007-34606094 Setaria italica
Seita.7G309300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34605595-34606094 Setaria italica
Seita.7G309300 0.5kb downstream 0.5kb downstream 5088 true scaffold_7: 34600507-34605594 Setaria italica
Seita.7G309300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34600507-34601006 Setaria italica
Seita.7G309300 1.0kb upstream 1.0kb upstream 5588 true scaffold_7: 34601007-34606594 Setaria italica
Seita.7G309300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34605595-34606594 Setaria italica
Seita.7G309300 1.0kb downstream 1.0kb downstream 5588 true scaffold_7: 34600007-34605594 Setaria italica
Seita.7G309300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34600007-34601006 Setaria italica
Seita.7G309300 2.0kb upstream 2.0kb upstream 6588 true scaffold_7: 34601007-34607594 Setaria italica
Seita.7G309300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34605595-34607594 Setaria italica
Seita.7G309300 2.0kb downstream 2.0kb downstream 6588 true scaffold_7: 34599007-34605594 Setaria italica
Seita.7G309300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34599007-34601006 Setaria italica
Seita.7G309300 5.0kb upstream 5.0kb upstream 9588 true scaffold_7: 34601007-34610594 Setaria italica
Seita.7G309300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34605595-34610594 Setaria italica
Seita.7G309300 5.0kb downstream 5.0kb downstream 9588 true scaffold_7: 34596007-34605594 Setaria italica
Seita.7G309300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34596007-34601006 Setaria italica
Seita.7G309300 10.0kb upstream 10.0kb upstream 14588 true scaffold_7: 34601007-34615594 Setaria italica
Seita.7G309300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34605595-34615594 Setaria italica
Seita.7G309300 10.0kb downstream 10.0kb downstream 14588 true scaffold_7: 34591007-34605594 Setaria italica
Seita.7G309300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34591007-34601006 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181534 5267 Panicoideae View MSA
124585937 5269 Grass View MSA
122042854 5273 Angiosperm View MSA
121346358 5274 Embryophyte View MSA
123428663 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.757        
cufflinks 1.143       High
cufflinks 0.688        
cufflinks 0.759        
cufflinks 0.656        
cufflinks 1.176       High
cufflinks 0.565       Low
cufflinks 0.887        
cufflinks 0.515       Low
cufflinks 0.717        
cufflinks 0.747        
cufflinks 0.972        
cufflinks 1.061       High
cufflinks 0.61        
cufflinks 1.055       High
cufflinks 0.507       Low
cufflinks 1.228       High
cufflinks 0.596        
cufflinks 0.636        
cufflinks 1.048       High

0 Strain