Gene : Seita.7G309000 S. italica v2.2
Defline:  (1 of 67) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  3090
Name:  ? Seita.7G309000 Secondary Identifier:  ? PAC:32702295
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G309000 0.5kb upstream 0.5kb upstream 2095 true scaffold_7: 34588512-34590606 Setaria italica
Seita.7G309000 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34590107-34590606 Setaria italica
Seita.7G309000 0.5kb downstream 0.5kb downstream 2095 true scaffold_7: 34588012-34590106 Setaria italica
Seita.7G309000 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34588012-34588511 Setaria italica
Seita.7G309000 1.0kb upstream 1.0kb upstream 2595 true scaffold_7: 34588512-34591106 Setaria italica
Seita.7G309000 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34590107-34591106 Setaria italica
Seita.7G309000 1.0kb downstream 1.0kb downstream 2595 true scaffold_7: 34587512-34590106 Setaria italica
Seita.7G309000 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34587512-34588511 Setaria italica
Seita.7G309000 2.0kb upstream 2.0kb upstream 3595 true scaffold_7: 34588512-34592106 Setaria italica
Seita.7G309000 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34590107-34592106 Setaria italica
Seita.7G309000 2.0kb downstream 2.0kb downstream 3595 true scaffold_7: 34586512-34590106 Setaria italica
Seita.7G309000 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34586512-34588511 Setaria italica
Seita.7G309000 5.0kb upstream 5.0kb upstream 6595 true scaffold_7: 34588512-34595106 Setaria italica
Seita.7G309000 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34590107-34595106 Setaria italica
Seita.7G309000 5.0kb downstream 5.0kb downstream 6595 true scaffold_7: 34583512-34590106 Setaria italica
Seita.7G309000 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34583512-34588511 Setaria italica
Seita.7G309000 10.0kb upstream 10.0kb upstream 11595 true scaffold_7: 34588512-34600106 Setaria italica
Seita.7G309000 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34590107-34600106 Setaria italica
Seita.7G309000 10.0kb downstream 10.0kb downstream 11595 true scaffold_7: 34578512-34590106 Setaria italica
Seita.7G309000 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34578512-34588511 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197682 5267 Panicoideae View MSA
124585832 5269 Grass View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.471        
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low Low
cufflinks 0.73       High
cufflinks 0.234        
cufflinks 0.435        
cufflinks 0.063     Low  
cufflinks 0.17        
cufflinks 0.197        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.221        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.189        
cufflinks 0.494        

0 Strain