Gene : Seita.7G311500 S. italica v2.2
Defline:  (1 of 3) PTHR22850:SF6 - GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1 Genomic Order:  3115
Name:  ? Seita.7G311500 Secondary Identifier:  ? PAC:32702863
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G311500 0.5kb upstream 0.5kb upstream 4708 true scaffold_7: 34720649-34725356 Setaria italica
Seita.7G311500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34724857-34725356 Setaria italica
Seita.7G311500 0.5kb downstream 0.5kb downstream 4708 true scaffold_7: 34720149-34724856 Setaria italica
Seita.7G311500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34720149-34720648 Setaria italica
Seita.7G311500 1.0kb upstream 1.0kb upstream 5208 true scaffold_7: 34720649-34725856 Setaria italica
Seita.7G311500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34724857-34725856 Setaria italica
Seita.7G311500 1.0kb downstream 1.0kb downstream 5208 true scaffold_7: 34719649-34724856 Setaria italica
Seita.7G311500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34719649-34720648 Setaria italica
Seita.7G311500 2.0kb upstream 2.0kb upstream 6208 true scaffold_7: 34720649-34726856 Setaria italica
Seita.7G311500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34724857-34726856 Setaria italica
Seita.7G311500 2.0kb downstream 2.0kb downstream 6208 true scaffold_7: 34718649-34724856 Setaria italica
Seita.7G311500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34718649-34720648 Setaria italica
Seita.7G311500 5.0kb upstream 5.0kb upstream 9208 true scaffold_7: 34720649-34729856 Setaria italica
Seita.7G311500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34724857-34729856 Setaria italica
Seita.7G311500 5.0kb downstream 5.0kb downstream 9208 true scaffold_7: 34715649-34724856 Setaria italica
Seita.7G311500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34715649-34720648 Setaria italica
Seita.7G311500 10.0kb upstream 10.0kb upstream 14208 true scaffold_7: 34720649-34734856 Setaria italica
Seita.7G311500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34724857-34734856 Setaria italica
Seita.7G311500 10.0kb downstream 10.0kb downstream 14208 true scaffold_7: 34710649-34724856 Setaria italica
Seita.7G311500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34710649-34720648 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185580 5267 Panicoideae View MSA
124589941 5269 Grass View MSA
122048731 5273 Angiosperm View MSA
121348301 5274 Embryophyte View MSA
123425749 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.244        
cufflinks 2.609       High
cufflinks 1.099        
cufflinks 0.569       Low
cufflinks 0.73       Low
cufflinks 2.219        
cufflinks 2.06        
cufflinks 1.341        
cufflinks 1.529        
cufflinks 2.577       High
cufflinks 1.606        
cufflinks 2.399        
cufflinks 1.223        
cufflinks 1.736        
cufflinks 1.588        
cufflinks 2.0        
cufflinks 2.455        
cufflinks 2.116        
cufflinks 1.012       Low
cufflinks 1.913        

0 Strain