Gene : Seita.7G316300 S. italica v2.2
Defline:  (1 of 5) PTHR10183 - CALPAIN Genomic Order:  3163
Name:  ? Seita.7G316300 Secondary Identifier:  ? PAC:32702241
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G316300 0.5kb upstream 0.5kb upstream 3196 true scaffold_7: 34957379-34960574 Setaria italica
Seita.7G316300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34960075-34960574 Setaria italica
Seita.7G316300 0.5kb downstream 0.5kb downstream 3196 true scaffold_7: 34956879-34960074 Setaria italica
Seita.7G316300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34956879-34957378 Setaria italica
Seita.7G316300 1.0kb upstream 1.0kb upstream 3696 true scaffold_7: 34957379-34961074 Setaria italica
Seita.7G316300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34960075-34961074 Setaria italica
Seita.7G316300 1.0kb downstream 1.0kb downstream 3696 true scaffold_7: 34956379-34960074 Setaria italica
Seita.7G316300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34956379-34957378 Setaria italica
Seita.7G316300 2.0kb upstream 2.0kb upstream 4696 true scaffold_7: 34957379-34962074 Setaria italica
Seita.7G316300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34960075-34962074 Setaria italica
Seita.7G316300 2.0kb downstream 2.0kb downstream 4696 true scaffold_7: 34955379-34960074 Setaria italica
Seita.7G316300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34955379-34957378 Setaria italica
Seita.7G316300 5.0kb upstream 5.0kb upstream 7696 true scaffold_7: 34957379-34965074 Setaria italica
Seita.7G316300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34960075-34965074 Setaria italica
Seita.7G316300 5.0kb downstream 5.0kb downstream 7696 true scaffold_7: 34952379-34960074 Setaria italica
Seita.7G316300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34952379-34957378 Setaria italica
Seita.7G316300 10.0kb upstream 10.0kb upstream 12696 true scaffold_7: 34957379-34970074 Setaria italica
Seita.7G316300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34960075-34970074 Setaria italica
Seita.7G316300 10.0kb downstream 10.0kb downstream 12696 true scaffold_7: 34947379-34960074 Setaria italica
Seita.7G316300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34947379-34957378 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064180 5267 Panicoideae View MSA
124363584 5269 Grass View MSA
122044402 5273 Angiosperm View MSA
121345695 5274 Embryophyte View MSA
123427497 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.2        
cufflinks 1.943        
cufflinks 1.13       Low
cufflinks 1.082       Low
cufflinks 1.435        
cufflinks 3.539        
cufflinks 2.404        
cufflinks 2.312        
cufflinks 1.81        
cufflinks 11.368       High
cufflinks 3.401        
cufflinks 21.812     High High
cufflinks 11.812       High
cufflinks 2.149        
cufflinks 12.895       High
cufflinks 1.025       Low
cufflinks 21.013     High High
cufflinks 1.096       Low
cufflinks 0.978       Low
cufflinks 20.574     High High

0 Strain