Gene : Seita.7G314600 S. italica v2.2
Defline:  (1 of 2) PTHR23346:SF19 - PROTEASOME-ASSOCIATED PROTEIN ECM29 HOMOLOG Genomic Order:  3146
Name:  ? Seita.7G314600 Secondary Identifier:  ? PAC:32703251
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G314600 0.5kb upstream 0.5kb upstream 16605 true scaffold_7: 34872866-34889470 Setaria italica
Seita.7G314600 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 34888971-34889470 Setaria italica
Seita.7G314600 0.5kb downstream 0.5kb downstream 16605 true scaffold_7: 34872366-34888970 Setaria italica
Seita.7G314600 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 34872366-34872865 Setaria italica
Seita.7G314600 1.0kb upstream 1.0kb upstream 17105 true scaffold_7: 34872866-34889970 Setaria italica
Seita.7G314600 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 34888971-34889970 Setaria italica
Seita.7G314600 1.0kb downstream 1.0kb downstream 17105 true scaffold_7: 34871866-34888970 Setaria italica
Seita.7G314600 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 34871866-34872865 Setaria italica
Seita.7G314600 2.0kb upstream 2.0kb upstream 18105 true scaffold_7: 34872866-34890970 Setaria italica
Seita.7G314600 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 34888971-34890970 Setaria italica
Seita.7G314600 2.0kb downstream 2.0kb downstream 18105 true scaffold_7: 34870866-34888970 Setaria italica
Seita.7G314600 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 34870866-34872865 Setaria italica
Seita.7G314600 5.0kb upstream 5.0kb upstream 21105 true scaffold_7: 34872866-34893970 Setaria italica
Seita.7G314600 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 34888971-34893970 Setaria italica
Seita.7G314600 5.0kb downstream 5.0kb downstream 21105 true scaffold_7: 34867866-34888970 Setaria italica
Seita.7G314600 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 34867866-34872865 Setaria italica
Seita.7G314600 10.0kb upstream 10.0kb upstream 26105 true scaffold_7: 34872866-34898970 Setaria italica
Seita.7G314600 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 34888971-34898970 Setaria italica
Seita.7G314600 10.0kb downstream 10.0kb downstream 26105 true scaffold_7: 34862866-34888970 Setaria italica
Seita.7G314600 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 34862866-34872865 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063374 5267 Panicoideae View MSA
124362867 5269 Grass View MSA
122042594 5273 Angiosperm View MSA
121344548 5274 Embryophyte View MSA
123425052 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.406       High
cufflinks 4.347        
cufflinks 3.402        
cufflinks 2.713       Low
cufflinks 2.747       Low
cufflinks 4.089        
cufflinks 3.901        
cufflinks 2.842       Low
cufflinks 3.303        
cufflinks 2.36       Low
cufflinks 4.822        
cufflinks 4.516        
cufflinks 5.239       High
cufflinks 3.235        
cufflinks 5.696       High
cufflinks 4.453        
cufflinks 3.601        
cufflinks 5.71       High
cufflinks 2.249       Low
cufflinks 4.233        

0 Strain