Gene : Seita.7G318200 S. italica v2.2
Defline:  (1 of 2) PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Genomic Order:  3182
Name:  ? Seita.7G318200 Secondary Identifier:  ? PAC:32702397
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G318200 0.5kb upstream 0.5kb upstream 3263 true scaffold_7: 35051122-35054384 Setaria italica
Seita.7G318200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 35053885-35054384 Setaria italica
Seita.7G318200 0.5kb downstream 0.5kb downstream 3263 true scaffold_7: 35050622-35053884 Setaria italica
Seita.7G318200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 35050622-35051121 Setaria italica
Seita.7G318200 1.0kb upstream 1.0kb upstream 3763 true scaffold_7: 35051122-35054884 Setaria italica
Seita.7G318200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 35053885-35054884 Setaria italica
Seita.7G318200 1.0kb downstream 1.0kb downstream 3763 true scaffold_7: 35050122-35053884 Setaria italica
Seita.7G318200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 35050122-35051121 Setaria italica
Seita.7G318200 2.0kb upstream 2.0kb upstream 4763 true scaffold_7: 35051122-35055884 Setaria italica
Seita.7G318200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 35053885-35055884 Setaria italica
Seita.7G318200 2.0kb downstream 2.0kb downstream 4763 true scaffold_7: 35049122-35053884 Setaria italica
Seita.7G318200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 35049122-35051121 Setaria italica
Seita.7G318200 5.0kb upstream 5.0kb upstream 7763 true scaffold_7: 35051122-35058884 Setaria italica
Seita.7G318200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 35053885-35058884 Setaria italica
Seita.7G318200 5.0kb downstream 5.0kb downstream 7763 true scaffold_7: 35046122-35053884 Setaria italica
Seita.7G318200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 35046122-35051121 Setaria italica
Seita.7G318200 10.0kb upstream 10.0kb upstream 12763 true scaffold_7: 35051122-35063884 Setaria italica
Seita.7G318200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 35053885-35063884 Setaria italica
Seita.7G318200 10.0kb downstream 10.0kb downstream 12763 true scaffold_7: 35041122-35053884 Setaria italica
Seita.7G318200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 35041122-35051121 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122054599 5267 Panicoideae Singleton cluster - no MSA
124592522 5269 Grass View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.831       High
cufflinks 0.947       High
cufflinks 0.264        
cufflinks 0.204       Low
cufflinks 0.152       Low
cufflinks 1.335       High
cufflinks 0.67        
cufflinks 0.908       High
cufflinks 0.388        
cufflinks 0.955       High
cufflinks 0.473        
cufflinks 0.25        
cufflinks 0.145     Low Low
cufflinks 0.255        
cufflinks 0.256        
cufflinks 0.766        
cufflinks 0.351        
cufflinks 0.753        
cufflinks 0.214        
cufflinks 0.21        

0 Strain