Gene : Seita.7G331500 S. italica v2.2
Defline:  (1 of 63) PF14416 - PMR5 N terminal Domain (PMR5N) Genomic Order:  3315
Name:  ? Seita.7G331500 Secondary Identifier:  ? PAC:32701976
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G331500 0.5kb upstream 0.5kb upstream 3452 true scaffold_7: 35722226-35725677 Setaria italica
Seita.7G331500 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 35725178-35725677 Setaria italica
Seita.7G331500 0.5kb downstream 0.5kb downstream 3452 true scaffold_7: 35721726-35725177 Setaria italica
Seita.7G331500 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 35721726-35722225 Setaria italica
Seita.7G331500 1.0kb upstream 1.0kb upstream 3952 true scaffold_7: 35722226-35726177 Setaria italica
Seita.7G331500 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 35725178-35726177 Setaria italica
Seita.7G331500 1.0kb downstream 1.0kb downstream 3952 true scaffold_7: 35721226-35725177 Setaria italica
Seita.7G331500 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 35721226-35722225 Setaria italica
Seita.7G331500 2.0kb upstream 2.0kb upstream 4952 true scaffold_7: 35722226-35727177 Setaria italica
Seita.7G331500 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 35725178-35727177 Setaria italica
Seita.7G331500 2.0kb downstream 2.0kb downstream 4952 true scaffold_7: 35720226-35725177 Setaria italica
Seita.7G331500 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 35720226-35722225 Setaria italica
Seita.7G331500 5.0kb upstream 5.0kb upstream 7952 true scaffold_7: 35722226-35730177 Setaria italica
Seita.7G331500 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 35725178-35730177 Setaria italica
Seita.7G331500 5.0kb downstream 5.0kb downstream 7952 true scaffold_7: 35717226-35725177 Setaria italica
Seita.7G331500 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 35717226-35722225 Setaria italica
Seita.7G331500 10.0kb upstream 10.0kb upstream 12952 true scaffold_7: 35722226-35735177 Setaria italica
Seita.7G331500 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 35725178-35735177 Setaria italica
Seita.7G331500 10.0kb downstream 10.0kb downstream 12952 true scaffold_7: 35712226-35725177 Setaria italica
Seita.7G331500 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 35712226-35722225 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199699 5267 Panicoideae View MSA
124585665 5269 Grass View MSA
122045837 5273 Angiosperm View MSA
121310513 5274 Embryophyte View MSA
123347976 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.08        
cufflinks 34.869     High High
cufflinks 0.085       Low
cufflinks 0.13       Low
cufflinks 0.639        
cufflinks 31.437     High High
cufflinks 3.698        
cufflinks 2.821        
cufflinks 4.094        
cufflinks 1.455        
cufflinks 3.831        
cufflinks 1.99        
cufflinks 7.872        
cufflinks 0.045     Low Low
cufflinks 7.964        
cufflinks 0.323        
cufflinks 3.309        
cufflinks 0.11       Low
cufflinks 0.093       Low
cufflinks 6.211        

0 Strain