Gene : Seita.8G000600 S. italica v2.2
Defline:  (1 of 2) KOG0845 - Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) Genomic Order:  6
Name:  ? Seita.8G000600 Secondary Identifier:  ? PAC:32716413
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G000600 0.5kb upstream 0.5kb upstream 6618 true scaffold_8: 47143-53760 Setaria italica
Seita.8G000600 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 53261-53760 Setaria italica
Seita.8G000600 0.5kb downstream 0.5kb downstream 6618 true scaffold_8: 46643-53260 Setaria italica
Seita.8G000600 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 46643-47142 Setaria italica
Seita.8G000600 1.0kb upstream 1.0kb upstream 7118 true scaffold_8: 47143-54260 Setaria italica
Seita.8G000600 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 53261-54260 Setaria italica
Seita.8G000600 1.0kb downstream 1.0kb downstream 7118 true scaffold_8: 46143-53260 Setaria italica
Seita.8G000600 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 46143-47142 Setaria italica
Seita.8G000600 2.0kb upstream 2.0kb upstream 8118 true scaffold_8: 47143-55260 Setaria italica
Seita.8G000600 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 53261-55260 Setaria italica
Seita.8G000600 2.0kb downstream 2.0kb downstream 8118 true scaffold_8: 45143-53260 Setaria italica
Seita.8G000600 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 45143-47142 Setaria italica
Seita.8G000600 5.0kb upstream 5.0kb upstream 11118 true scaffold_8: 47143-58260 Setaria italica
Seita.8G000600 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 53261-58260 Setaria italica
Seita.8G000600 5.0kb downstream 5.0kb downstream 11118 true scaffold_8: 42143-53260 Setaria italica
Seita.8G000600 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 42143-47142 Setaria italica
Seita.8G000600 10.0kb upstream 10.0kb upstream 16118 true scaffold_8: 47143-63260 Setaria italica
Seita.8G000600 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 53261-63260 Setaria italica
Seita.8G000600 10.0kb downstream 10.0kb downstream 16118 true scaffold_8: 37143-53260 Setaria italica
Seita.8G000600 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 37143-47142 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199218 5267 Panicoideae View MSA
124574361 5269 Grass View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.253     High High
cufflinks 16.18     High  
cufflinks 11.2     High  
cufflinks 12.194     High  
cufflinks 10.705     High  
cufflinks 16.426     High  
cufflinks 17.015     High  
cufflinks 9.092       Low
cufflinks 9.257       Low
cufflinks 10.902        
cufflinks 19.66     High  
cufflinks 15.224     High  
cufflinks 12.189        
cufflinks 8.755       Low
cufflinks 16.456     High  
cufflinks 23.27     High High
cufflinks 12.45        
cufflinks 35.563     High High
cufflinks 10.822        
cufflinks 11.855        

0 Strain