Gene : Seita.7G335200 S. italica v2.2
Defline:  (1 of 2) KOG0845 - Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) Genomic Order:  3352
Name:  ? Seita.7G335200 Secondary Identifier:  ? PAC:32704988
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G335200 0.5kb upstream 0.5kb upstream 5291 true scaffold_7: 35922111-35927401 Setaria italica
Seita.7G335200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 35922111-35922610 Setaria italica
Seita.7G335200 0.5kb downstream 0.5kb downstream 5291 true scaffold_7: 35922611-35927901 Setaria italica
Seita.7G335200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 35927402-35927901 Setaria italica
Seita.7G335200 1.0kb upstream 1.0kb upstream 5791 true scaffold_7: 35921611-35927401 Setaria italica
Seita.7G335200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 35921611-35922610 Setaria italica
Seita.7G335200 1.0kb downstream 1.0kb downstream 5791 true scaffold_7: 35922611-35928401 Setaria italica
Seita.7G335200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 35927402-35928401 Setaria italica
Seita.7G335200 2.0kb upstream 2.0kb upstream 6791 true scaffold_7: 35920611-35927401 Setaria italica
Seita.7G335200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 35920611-35922610 Setaria italica
Seita.7G335200 2.0kb downstream 2.0kb downstream 6791 true scaffold_7: 35922611-35929401 Setaria italica
Seita.7G335200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 35927402-35929401 Setaria italica
Seita.7G335200 5.0kb upstream 5.0kb upstream 9791 true scaffold_7: 35917611-35927401 Setaria italica
Seita.7G335200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 35917611-35922610 Setaria italica
Seita.7G335200 5.0kb downstream 5.0kb downstream 9791 true scaffold_7: 35922611-35932401 Setaria italica
Seita.7G335200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 35927402-35932401 Setaria italica
Seita.7G335200 10.0kb upstream 10.0kb upstream 14791 true scaffold_7: 35912611-35927401 Setaria italica
Seita.7G335200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 35912611-35922610 Setaria italica
Seita.7G335200 10.0kb downstream 10.0kb downstream 14791 true scaffold_7: 35922611-35937401 Setaria italica
Seita.7G335200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 35927402-35937401 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199218 5267 Panicoideae View MSA
124574361 5269 Grass View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.963     High High
cufflinks 15.316     High  
cufflinks 13.309     High  
cufflinks 11.09     High  
cufflinks 10.654     High  
cufflinks 16.722     High High
cufflinks 15.259     High  
cufflinks 10.573        
cufflinks 10.791        
cufflinks 11.294        
cufflinks 15.867     High  
cufflinks 9.86       Low
cufflinks 10.107        
cufflinks 11.553        
cufflinks 13.206        
cufflinks 17.657     High High
cufflinks 9.724       Low
cufflinks 22.39     High High
cufflinks 9.709       Low
cufflinks 9.893        

0 Strain