Gene : Seita.7G270900 S. italica v2.2
Defline:  (1 of 1) PTHR21262:SF12 - CA2+-ACTIVATED RELA/SPOT-LIKE PROTEIN Genomic Order:  2709
Name:  ? Seita.7G270900 Secondary Identifier:  ? PAC:32702718
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G270900 0.5kb upstream 0.5kb upstream 5835 true scaffold_7: 32246040-32251874 Setaria italica
Seita.7G270900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 32246040-32246539 Setaria italica
Seita.7G270900 0.5kb downstream 0.5kb downstream 5835 true scaffold_7: 32246540-32252374 Setaria italica
Seita.7G270900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 32251875-32252374 Setaria italica
Seita.7G270900 1.0kb upstream 1.0kb upstream 6335 true scaffold_7: 32245540-32251874 Setaria italica
Seita.7G270900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 32245540-32246539 Setaria italica
Seita.7G270900 1.0kb downstream 1.0kb downstream 6335 true scaffold_7: 32246540-32252874 Setaria italica
Seita.7G270900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 32251875-32252874 Setaria italica
Seita.7G270900 2.0kb upstream 2.0kb upstream 7335 true scaffold_7: 32244540-32251874 Setaria italica
Seita.7G270900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 32244540-32246539 Setaria italica
Seita.7G270900 2.0kb downstream 2.0kb downstream 7335 true scaffold_7: 32246540-32253874 Setaria italica
Seita.7G270900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 32251875-32253874 Setaria italica
Seita.7G270900 5.0kb upstream 5.0kb upstream 10335 true scaffold_7: 32241540-32251874 Setaria italica
Seita.7G270900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 32241540-32246539 Setaria italica
Seita.7G270900 5.0kb downstream 5.0kb downstream 10335 true scaffold_7: 32246540-32256874 Setaria italica
Seita.7G270900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 32251875-32256874 Setaria italica
Seita.7G270900 10.0kb upstream 10.0kb upstream 15335 true scaffold_7: 32236540-32251874 Setaria italica
Seita.7G270900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 32236540-32246539 Setaria italica
Seita.7G270900 10.0kb downstream 10.0kb downstream 15335 true scaffold_7: 32246540-32261874 Setaria italica
Seita.7G270900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 32251875-32261874 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178126 5267 Panicoideae View MSA
124571967 5269 Grass View MSA
122044373 5273 Angiosperm View MSA
121310285 5274 Embryophyte View MSA
123347812 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.037        
cufflinks 1.662        
cufflinks 9.097       High
cufflinks 9.864       High
cufflinks 10.642     High High
cufflinks 1.582        
cufflinks 6.122        
cufflinks 4.877        
cufflinks 6.129        
cufflinks 0.962       Low
cufflinks 1.393        
cufflinks 1.213        
cufflinks 1.684        
cufflinks 2.517        
cufflinks 0.839       Low
cufflinks 8.179       High
cufflinks 1.076       Low
cufflinks 4.14        
cufflinks 9.19       High
cufflinks 0.749       Low

0 Strain