Gene : Seita.7G273200 S. italica v2.2
Defline:  (1 of 2) PTHR10909:SF331 - ACYL-COENZYME A OXIDASE 4, PEROXISOMAL Genomic Order:  2732
Name:  ? Seita.7G273200 Secondary Identifier:  ? PAC:32703282
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5136 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-6837 Setaria italica pathologic  
Sitalica PWY-735 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G273200 0.5kb upstream 0.5kb upstream 7133 true scaffold_7: 32385204-32392336 Setaria italica
Seita.7G273200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 32385204-32385703 Setaria italica
Seita.7G273200 0.5kb downstream 0.5kb downstream 7133 true scaffold_7: 32385704-32392836 Setaria italica
Seita.7G273200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 32392337-32392836 Setaria italica
Seita.7G273200 1.0kb upstream 1.0kb upstream 7633 true scaffold_7: 32384704-32392336 Setaria italica
Seita.7G273200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 32384704-32385703 Setaria italica
Seita.7G273200 1.0kb downstream 1.0kb downstream 7633 true scaffold_7: 32385704-32393336 Setaria italica
Seita.7G273200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 32392337-32393336 Setaria italica
Seita.7G273200 2.0kb upstream 2.0kb upstream 8633 true scaffold_7: 32383704-32392336 Setaria italica
Seita.7G273200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 32383704-32385703 Setaria italica
Seita.7G273200 2.0kb downstream 2.0kb downstream 8633 true scaffold_7: 32385704-32394336 Setaria italica
Seita.7G273200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 32392337-32394336 Setaria italica
Seita.7G273200 5.0kb upstream 5.0kb upstream 11633 true scaffold_7: 32380704-32392336 Setaria italica
Seita.7G273200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 32380704-32385703 Setaria italica
Seita.7G273200 5.0kb downstream 5.0kb downstream 11633 true scaffold_7: 32385704-32397336 Setaria italica
Seita.7G273200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 32392337-32397336 Setaria italica
Seita.7G273200 10.0kb upstream 10.0kb upstream 16633 true scaffold_7: 32375704-32392336 Setaria italica
Seita.7G273200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 32375704-32385703 Setaria italica
Seita.7G273200 10.0kb downstream 10.0kb downstream 16633 true scaffold_7: 32385704-32402336 Setaria italica
Seita.7G273200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 32392337-32402336 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180078 5267 Panicoideae View MSA
124568476 5269 Grass View MSA
122043325 5273 Angiosperm View MSA
121347950 5274 Embryophyte View MSA
123424845 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.378        
cufflinks 6.968        
cufflinks 17.898     High High
cufflinks 19.605     High High
cufflinks 9.745        
cufflinks 5.793       Low
cufflinks 4.974       Low
cufflinks 7.919        
cufflinks 5.19       Low
cufflinks 10.397        
cufflinks 10.072        
cufflinks 17.789     High High
cufflinks 17.933     High High
cufflinks 10.625        
cufflinks 9.641        
cufflinks 5.424       Low
cufflinks 9.815        
cufflinks 18.253     High High
cufflinks 15.387     High  
cufflinks 9.054        

0 Strain