Gene : Seita.7G286200 S. italica v2.2
Defline:  (1 of 2) KOG0978//KOG4593 - E3 ubiquitin ligase involved in syntaxin degradation // Mitotic checkpoint protein MAD1 Genomic Order:  2862
Name:  ? Seita.7G286200 Secondary Identifier:  ? PAC:32702168
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G286200 0.5kb upstream 0.5kb upstream 7372 true scaffold_7: 33215708-33223079 Setaria italica
Seita.7G286200 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 33222580-33223079 Setaria italica
Seita.7G286200 0.5kb downstream 0.5kb downstream 7372 true scaffold_7: 33215208-33222579 Setaria italica
Seita.7G286200 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 33215208-33215707 Setaria italica
Seita.7G286200 1.0kb upstream 1.0kb upstream 7872 true scaffold_7: 33215708-33223579 Setaria italica
Seita.7G286200 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 33222580-33223579 Setaria italica
Seita.7G286200 1.0kb downstream 1.0kb downstream 7872 true scaffold_7: 33214708-33222579 Setaria italica
Seita.7G286200 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 33214708-33215707 Setaria italica
Seita.7G286200 2.0kb upstream 2.0kb upstream 8872 true scaffold_7: 33215708-33224579 Setaria italica
Seita.7G286200 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 33222580-33224579 Setaria italica
Seita.7G286200 2.0kb downstream 2.0kb downstream 8872 true scaffold_7: 33213708-33222579 Setaria italica
Seita.7G286200 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 33213708-33215707 Setaria italica
Seita.7G286200 5.0kb upstream 5.0kb upstream 11872 true scaffold_7: 33215708-33227579 Setaria italica
Seita.7G286200 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 33222580-33227579 Setaria italica
Seita.7G286200 5.0kb downstream 5.0kb downstream 11872 true scaffold_7: 33210708-33222579 Setaria italica
Seita.7G286200 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 33210708-33215707 Setaria italica
Seita.7G286200 10.0kb upstream 10.0kb upstream 16872 true scaffold_7: 33215708-33232579 Setaria italica
Seita.7G286200 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 33222580-33232579 Setaria italica
Seita.7G286200 10.0kb downstream 10.0kb downstream 16872 true scaffold_7: 33205708-33222579 Setaria italica
Seita.7G286200 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 33205708-33215707 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185145 5267 Panicoideae View MSA
124568295 5269 Grass View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.448        
cufflinks 3.174       High
cufflinks 0.008     Low Low
cufflinks 0.005     Low Low
cufflinks 0.06     Low  
cufflinks 2.688       High
cufflinks 1.747        
cufflinks 0.844        
cufflinks 1.081        
cufflinks 0.317     Low  
cufflinks 1.347        
cufflinks 0.478        
cufflinks 0.54        
cufflinks 0.007     Low Low
cufflinks 1.288        
cufflinks 0.706        
cufflinks 0.571        
cufflinks 0.435        
cufflinks 0.012     Low Low
cufflinks 0.725        

0 Strain