Gene : Seita.7G283900 S. italica v2.2
Defline:  (1 of 2) PTHR11699//PTHR11699:SF175 - ALDEHYDE DEHYDROGENASE-RELATED Genomic Order:  2839
Name:  ? Seita.7G283900 Secondary Identifier:  ? PAC:32703753
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2724 Setaria italica pathologic  
Sitalica PWY66-21 Setaria italica pathologic  
Sitalica PWY66-389 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G283900 0.5kb upstream 0.5kb upstream 5019 true scaffold_7: 33061968-33066986 Setaria italica
Seita.7G283900 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 33066487-33066986 Setaria italica
Seita.7G283900 0.5kb downstream 0.5kb downstream 5019 true scaffold_7: 33061468-33066486 Setaria italica
Seita.7G283900 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 33061468-33061967 Setaria italica
Seita.7G283900 1.0kb upstream 1.0kb upstream 5519 true scaffold_7: 33061968-33067486 Setaria italica
Seita.7G283900 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 33066487-33067486 Setaria italica
Seita.7G283900 1.0kb downstream 1.0kb downstream 5519 true scaffold_7: 33060968-33066486 Setaria italica
Seita.7G283900 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 33060968-33061967 Setaria italica
Seita.7G283900 2.0kb upstream 2.0kb upstream 6519 true scaffold_7: 33061968-33068486 Setaria italica
Seita.7G283900 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 33066487-33068486 Setaria italica
Seita.7G283900 2.0kb downstream 2.0kb downstream 6519 true scaffold_7: 33059968-33066486 Setaria italica
Seita.7G283900 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 33059968-33061967 Setaria italica
Seita.7G283900 5.0kb upstream 5.0kb upstream 9519 true scaffold_7: 33061968-33071486 Setaria italica
Seita.7G283900 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 33066487-33071486 Setaria italica
Seita.7G283900 5.0kb downstream 5.0kb downstream 9519 true scaffold_7: 33056968-33066486 Setaria italica
Seita.7G283900 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 33056968-33061967 Setaria italica
Seita.7G283900 10.0kb upstream 10.0kb upstream 14519 true scaffold_7: 33061968-33076486 Setaria italica
Seita.7G283900 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 33066487-33076486 Setaria italica
Seita.7G283900 10.0kb downstream 10.0kb downstream 14519 true scaffold_7: 33051968-33066486 Setaria italica
Seita.7G283900 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 33051968-33061967 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175771 5267 Panicoideae View MSA
124578019 5269 Grass View MSA
122047593 5273 Angiosperm View MSA
121349887 5274 Embryophyte View MSA
123425420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.985        
cufflinks 4.804       High
cufflinks 0.02     Low Low
cufflinks 0.006     Low Low
cufflinks 0.089        
cufflinks 3.69       High
cufflinks 1.246        
cufflinks 1.266        
cufflinks 0.222        
cufflinks 3.17       High
cufflinks 8.51       High
cufflinks 0.059     Low  
cufflinks 0.074     Low  
cufflinks 0.011     Low Low
cufflinks 0.137        
cufflinks 0.256        
cufflinks 0.055     Low  
cufflinks 0.057     Low  
cufflinks 0.044     Low  
cufflinks 0.083     Low  

0 Strain