Gene : Seita.7G290300 S. italica v2.2
Defline:  (1 of 4) 6.6.1.1 - Magnesium chelatase / Protoporphyrin IX Mg-chelatase Genomic Order:  2903
Name:  ? Seita.7G290300 Secondary Identifier:  ? PAC:32703780
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CHLOROPHYLL-SYN Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G290300 0.5kb upstream 0.5kb upstream 4122 true scaffold_7: 33441427-33445548 Setaria italica
Seita.7G290300 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 33441427-33441926 Setaria italica
Seita.7G290300 0.5kb downstream 0.5kb downstream 4122 true scaffold_7: 33441927-33446048 Setaria italica
Seita.7G290300 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 33445549-33446048 Setaria italica
Seita.7G290300 1.0kb upstream 1.0kb upstream 4622 true scaffold_7: 33440927-33445548 Setaria italica
Seita.7G290300 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 33440927-33441926 Setaria italica
Seita.7G290300 1.0kb downstream 1.0kb downstream 4622 true scaffold_7: 33441927-33446548 Setaria italica
Seita.7G290300 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 33445549-33446548 Setaria italica
Seita.7G290300 2.0kb upstream 2.0kb upstream 5622 true scaffold_7: 33439927-33445548 Setaria italica
Seita.7G290300 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 33439927-33441926 Setaria italica
Seita.7G290300 2.0kb downstream 2.0kb downstream 5622 true scaffold_7: 33441927-33447548 Setaria italica
Seita.7G290300 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 33445549-33447548 Setaria italica
Seita.7G290300 5.0kb upstream 5.0kb upstream 8622 true scaffold_7: 33436927-33445548 Setaria italica
Seita.7G290300 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 33436927-33441926 Setaria italica
Seita.7G290300 5.0kb downstream 5.0kb downstream 8622 true scaffold_7: 33441927-33450548 Setaria italica
Seita.7G290300 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 33445549-33450548 Setaria italica
Seita.7G290300 10.0kb upstream 10.0kb upstream 13622 true scaffold_7: 33431927-33445548 Setaria italica
Seita.7G290300 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 33431927-33441926 Setaria italica
Seita.7G290300 10.0kb downstream 10.0kb downstream 13622 true scaffold_7: 33441927-33455548 Setaria italica
Seita.7G290300 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 33445549-33455548 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026298 5273 Angiosperm View MSA
122178518 5267 Panicoideae View MSA
124584000 5269 Grass View MSA
121346302 5274 Embryophyte View MSA
123426232 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.444     High  
cufflinks 25.888     High  
cufflinks 12.168     High  
cufflinks 8.349        
cufflinks 61.022     High High
cufflinks 24.449     High  
cufflinks 66.598     High High
cufflinks 89.913     High High
cufflinks 130.691     High High
cufflinks 13.116        
cufflinks 14.069     High  
cufflinks 1.537       Low
cufflinks 2.149       Low
cufflinks 18.252     High  
cufflinks 2.066       Low
cufflinks 44.226     High  
cufflinks 1.783       Low
cufflinks 7.742        
cufflinks 10.423        
cufflinks 1.854       Low

0 Strain