Gene : Seita.7G290100 S. italica v2.2
Defline:  (1 of 2) KOG3233 - RNA polymerase III, subunit C34 Genomic Order:  2901
Name:  ? Seita.7G290100 Secondary Identifier:  ? PAC:32703435
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.7G290100 0.5kb upstream 0.5kb upstream 3827 true scaffold_7: 33436945-33440771 Setaria italica
Seita.7G290100 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 33436945-33437444 Setaria italica
Seita.7G290100 0.5kb downstream 0.5kb downstream 3827 true scaffold_7: 33437445-33441271 Setaria italica
Seita.7G290100 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 33440772-33441271 Setaria italica
Seita.7G290100 1.0kb upstream 1.0kb upstream 4327 true scaffold_7: 33436445-33440771 Setaria italica
Seita.7G290100 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 33436445-33437444 Setaria italica
Seita.7G290100 1.0kb downstream 1.0kb downstream 4327 true scaffold_7: 33437445-33441771 Setaria italica
Seita.7G290100 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 33440772-33441771 Setaria italica
Seita.7G290100 2.0kb upstream 2.0kb upstream 5327 true scaffold_7: 33435445-33440771 Setaria italica
Seita.7G290100 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 33435445-33437444 Setaria italica
Seita.7G290100 2.0kb downstream 2.0kb downstream 5327 true scaffold_7: 33437445-33442771 Setaria italica
Seita.7G290100 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 33440772-33442771 Setaria italica
Seita.7G290100 5.0kb upstream 5.0kb upstream 8327 true scaffold_7: 33432445-33440771 Setaria italica
Seita.7G290100 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 33432445-33437444 Setaria italica
Seita.7G290100 5.0kb downstream 5.0kb downstream 8327 true scaffold_7: 33437445-33445771 Setaria italica
Seita.7G290100 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 33440772-33445771 Setaria italica
Seita.7G290100 10.0kb upstream 10.0kb upstream 13327 true scaffold_7: 33427445-33440771 Setaria italica
Seita.7G290100 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 33427445-33437444 Setaria italica
Seita.7G290100 10.0kb downstream 10.0kb downstream 13327 true scaffold_7: 33437445-33450771 Setaria italica
Seita.7G290100 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 33440772-33450771 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179787 5267 Panicoideae View MSA
124586252 5269 Grass View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.885       High
cufflinks 1.853        
cufflinks 1.753        
cufflinks 1.162       Low
cufflinks 1.06       Low
cufflinks 1.918        
cufflinks 1.447        
cufflinks 1.319        
cufflinks 1.214        
cufflinks 1.836        
cufflinks 2.004        
cufflinks 1.585        
cufflinks 1.029       Low
cufflinks 1.399        
cufflinks 1.386        
cufflinks 2.77       High
cufflinks 1.607        
cufflinks 2.913       High
cufflinks 1.134       Low
cufflinks 1.335        

0 Strain